FMO11944.5prime Sequence
1017 bp (980 high quality bases) assembled on 2012-06-21
> FMO11944.5prime
CAGTCGACATGTCTGAGCTGCGTCGCAGTTTAAGTCGACTCTCGATGATC
GTCTACAGAGCCACCCATTCCAGCGAACAGTCGTGGCGGGAGGAGCTTCT
CAGGTACCGGCAGACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGG
TCTTCAAGCACGGCGAGTGCAACGTTGTGCAGGGAAATGTGGCCAAGAGA
CGGCGTCGCTATCTGCAGGACATCTTCACCACCCTGGTTGACGCCCAGTG
GCGCTGGACGCTGCTCGTCTTCGCCGCCAGCTTCGTGTTCTCGTGGGCCT
TCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATGATCTGGAG
TACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAACATAACGCA
CACGGTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTTCCTGTACT
CCGTGGAAACCCAGACGACGATAGGCTATGGTAATCGCTATGTGACGGAG
GAGTGCCCGGAGGCGATATTCACGATGTGCATCCAGTGCATCACGGGTGT
CTTCATCCAGGCGTTCATGGTGGGCATTGTGTTTGCCAAGTTGTCGCGTC
CCAAGAAACGTGCCCAGACGCTGCTCTTCTCGCGCAATGCTGTTATCTGC
CACCGGGATGGAGTTCCATGCCTGATGTTCCGTGTGGGAGACATGCGCAA
GTCGCACATCATCGAGGCCCATGTGCGGGCCCAGATCATCCGCAAGAAGG
TGACAAAGGAGGGCGAGGTGCTGCCCTTCTACCAGCAGGAGTTGCACATC
GGAGCCGATGGTGGAGAGGATCGGCTAATGTTCATCTGGCCCACTACCAT
AGTGCACAAATTGATAGGAACAGTCCACTGTACATGCTCTCCGCCTCCGA
AATGCTAAAGGACGCTTCGAAGTGTTGGTTATGCTGGAAGGCGTCATCGA
GTCCACTGTCATGACCATACAAGGCCAAGAAGCAGCTTACCTTGCCCTCG
GGAGGTGTTGCGGGGCC
FMO11944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk1-RB | 2813 | CG44159-RB | 463..1468 | 9..1017 | 4775 | 98.6 | Plus |
| Irk1-RD | 2202 | CG44159-RD | 23..937 | 100..1017 | 4320 | 98.5 | Plus |
| Irk1-RG | 2910 | CG44159-RG | 653..1565 | 102..1017 | 4310 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23183441..23184164 | 216..937 | 3490 | 99.4 | Plus |
| 3R | 32079331 | 3R | 23182942..23183061 | 100..219 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23179079..23179176 | 9..106 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5832..5900 | 684..752 | 120 | 63.8 | Plus |
FMO11944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:17 Download gff for
FMO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir-RB | 463..1468 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:01 Download gff for
FMO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..1468 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:13 Download gff for
FMO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk1-RB | 463..1468 | 9..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:13 Download gff for
FMO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23179079..23179173 | 9..103 | 100 | -> | Plus |
| 3R | 23182946..23183060 | 104..218 | 100 | -> | Plus |
| 3R | 23183444..23184164 | 219..937 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:01 Download gff for
FMO11944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19004801..19004895 | 9..103 | 100 | -> | Plus |
| arm_3R | 19008668..19008782 | 104..218 | 100 | -> | Plus |
| arm_3R | 19009166..19009886 | 219..937 | 99 | -> | Plus |
