FMO11946.5prime Sequence
1174 bp (1055 high quality bases) assembled on 2012-06-21
> FMO11946.5prime
CAGTCGACATGCTGGGGAAAGTGAAAGGCAGCATTATTGTCATTTACATG
ACCACTGGACTGCTGTACATACTGCTGAGCATAAAGTCATCCGCCAGCTA
CATGAGGCCAAAACGCCAGATGTGGCCCGTGGATCATCCAGGGATCGTCC
TCTATAGACAGCACCCGAACGCCATGCGAAAGTTCTACTGGTACAACGCT
AGGACCCCGATCCTGGTGGGCAAAATGCGTCTAAAAAACTACATGCGCAA
CATGCACATGCTGCCCCGATACGTGCCCTCACCTGTCCAGTTCCACGAGG
CCTATGCGAACTCGAAGAGGAGCATCTTCAGGGACTTGAGCCAAGTGAAT
GGGTTCAAGAGCACACTCCTGCCCATTGCTACTTCCACCGTTGACTTCGT
TGCGGCCCCGCTCAACACGATTGAGTACAGTTCCCCTCCGGTAAACGCAC
CTATTGGTTTCAGTTCAGCCCCAGTCAACGCCTTCGTGCCCCTCACGACG
GGAACCCTTCCGAGCGCAGAACGCCTCATTGGCGCTCCGAGTCTGTGGAA
CCACTCCGAAACCCACGCCTCCAACGACGGCTGGAACAAGTGCCGCGAAA
ACTGCCTCCAGATTCCGTTCCAGGAGTATGCCAAGGACCAATACAGCTCG
CAGAGCAAGACCAGTGACCTGCCGGTGACCACGACAACCACTTTGCCCTA
CTTCAACTACGTTGCGCACACCTACTTCACCCTTGACGACGTGATTCTCC
CCCATTCCGCATCGAAACTCGGCAAATCTCCAGCACAAGACCAGCAATTT
CGGCCCAGTCACCAAATTCTCACAACGGAAAGGCCCCAGGAGCTTTTCAC
CGAGCGGTTTCAGCACACCACGCCGCCTCAACTACACAACCACGACCACT
GAATTCACTTTTCCGGGGAAACCACTGCTTTGGAAATGGAGTACAGATAT
AGCACTCGACCAAGCTGGTTTAGCCCACTACTCCAGCACACACAACCGAA
GCTGCGGCTTCTGAAGATCCCCGAAATGACACTTCGCAACCCGCTCAAAC
GTCTATCCACGCGAATGTTACGACTGATCCTTTAAGCCAGACTAATCCTG
AACGACCAAAACCTTTCCTTTCAGGATGAACTAAACTGAAACTTTGGAGC
CTTACCTTAAACTGTACATCTACG
FMO11946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13563-RB | 2123 | CG13563-RB | 166..1324 | 9..1145 | 5100 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24055951..24056662 | 318..1022 | 3185 | 98.5 | Plus |
| 2R | 25286936 | 2R | 24055687..24055890 | 117..320 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 24055572..24055634 | 57..119 | 315 | 100 | Plus |
| 2R | 25286936 | 2R | 24055471..24055520 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:55 has no hits.
FMO11946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:09 Download gff for
FMO11946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 158..1244 | 1..1074 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:40 Download gff for
FMO11946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 158..1244 | 1..1074 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:58 Download gff for
FMO11946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13563-RB | 158..1244 | 1..1074 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:58 Download gff for
FMO11946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24055463..24055519 | 1..57 | 92 | -> | Plus |
| 2R | 24055573..24055634 | 58..119 | 100 | -> | Plus |
| 2R | 24055690..24055889 | 120..319 | 100 | -> | Plus |
| 2R | 24055953..24056720 | 320..1074 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:40 Download gff for
FMO11946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19942986..19943042 | 1..57 | 92 | -> | Plus |
| arm_2R | 19943096..19943157 | 58..119 | 100 | -> | Plus |
| arm_2R | 19943213..19943412 | 120..319 | 100 | -> | Plus |
| arm_2R | 19943476..19944243 | 320..1074 | 97 | == | Plus |
