FMO11947.5prime Sequence
1170 bp (1025 high quality bases) assembled on 2012-06-21
> FMO11947.5prime
CAGTCGACATGTCGCAAACCCAGAGCATAACACCCATTCCCAGCACACCG
CCGCCTTCACGGCGGGCAAATCGACCGCCCAGGATCAACATCCACAATCT
GACCAGCGGATCGGCAATGAGCCAGGCATCGATGCCACCCAGTGCCCAGC
CACCCTATACGGCCCAAACGAACTTCACGGGCAATGGAACACAGGGACCC
TACTGGCCACCAATGGCCAATCCCTTCGGATACGGCAACTTTATGACCAA
GGGCTACGAGGGCTTCCTCGATATCACAAAGTCGGGCTTGAGCTTCGGCG
AGAAGATGACCTTCGGCATGTACAAGTGGTCGCGCCGATGGTTCACCCAC
ATCTTCCTCATCCTCATCCTGGCACTATACAATATCGGCGGTGCCGTTGT
ATTCCGCACAATCGAAGTTCGTCATGCAAATCAGGAAAAGCTGGTGGTGC
AGGATCAGCAAAAGAGTTTCTTCAATGAAATGCGTCAGGTTTCCGGCGAT
CTGAGCGGGTTGAGCAAACTTGAATTCGAGGGTCAGGTGCTGCGCATCAT
GAACACCTATCCAACGGTGGTGCAATCACTATTGCGATCCGGAATGGTAG
ACAATACGGATCCGTGGTCCTTCTGGGATGCCATGGTCTATTCCGCTACG
ATTTACACGACCATAGGTTACGGCCACATCACTCCAAAGACGGGCATGGG
TCGATCCCTGACCATCGTCTATGCCATCATCGGCATCCCCATGTTCCTGA
TCGTGCTGGCCGATCTGGGCAAGTTATTCACGCGCTGCGTCAAGTTCCTG
TGGGTGTATGTGCGACGGATGTACTACACGCGCTCCTGCCGCCGGATACG
AAAGCAGCAGCAGATCCGGAGCGCCATGACAGGCTTCAATACGATGTACG
ACATGGCCATCCGCAGGCCGAGCATGTTCTTCAGCAACTCTGCGCAGAAG
AACGATGAGGAGTCGCAGCGGATGCCGAGGCGCAAGATCGGTGGGCACCC
TCGCACCCGGAGACACCACATCACCCCTATCACAAGACCTTCGGAGGTGG
ACGACGAGTTCATTTGCCAGGTGTCGGTGCCTCGCTGCTGCCTAATACGT
AACATCCTCTAGATCCTTCGGCTTTCTATGAATGACCCAGCTGACTCACT
GTATGCCTCTCACTACGTGT
FMO11947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34396-RC | 2175 | CG34396-RC | 278..1446 | 8..1170 | 5245 | 97.6 | Plus |
| CG34396-RD | 3484 | CG34396-RD | 2235..2755 | 656..1170 | 1975 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21092499..21092908 | 8..417 | 2050 | 100 | Plus |
| 2R | 25286936 | 2R | 21100213..21100650 | 665..1101 | 1645 | 95.2 | Plus |
| 2R | 25286936 | 2R | 21093755..21093914 | 509..668 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 21093592..21093685 | 416..509 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:59 has no hits.
FMO11947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:10 Download gff for
FMO11947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 254..1406 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:41 Download gff for
FMO11947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 270..1422 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:59 Download gff for
FMO11947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34396-RC | 270..1422 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:59 Download gff for
FMO11947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21092491..21092908 | 1..417 | 99 | -> | Plus |
| 2R | 21093594..21093685 | 418..509 | 100 | -> | Plus |
| 2R | 21093756..21093912 | 510..666 | 100 | -> | Plus |
| 2R | 21100215..21100700 | 667..1147 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:41 Download gff for
FMO11947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16981261..16981417 | 510..666 | 100 | -> | Plus |
| arm_2R | 16979996..16980413 | 1..417 | 99 | -> | Plus |
| arm_2R | 16981099..16981190 | 418..509 | 100 | -> | Plus |
| arm_2R | 16987720..16988205 | 667..1147 | 95 | | Plus |
