FMO11948.5prime Sequence
1078 bp (523 high quality bases) assembled on 2012-06-21
> FMO11948.5prime
CAGTCGACATGGACGTCGATCCCGCAGAAGAGGCGCCTCTAGACGAGGCA
CATACGTCCATATACGACGGCTATCCGCCCGATTTCGGCTACTTCAACAT
GGCCCACGGTATGCTGGTGGAGATCTCCGAGGAGATCCGGGCCAAGTTTC
CCCACGAGCCGCGTCTACGTTTCTCCCAGCTAAACAACCTTCACCTAGCG
GCCCGCAGTGGTCAGATGTTGAGCTTCGTCGAGATCTTGAATTCGGTTAG
CTGCAGGGCGGTGCAGACCCACCTGGTGAATACAAATTTCGATCAGCCGG
ATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATGTG
AAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGAGA
ATGCAATGTCATCTACGACGGGGATGGTGGTCTACGGAGCCCACAGCCCC
TGTGGGTGGCTGCCGGAAATGGGGCCACTGCAGATAGTCAAAATGCTCGT
CCAAACGGGAGCGGCCAATCAATCACAATACCAAGGGCGCAGTCCGTCGC
CGCTGAAAGCGGCCTGGCATTGAGGTCCAATTGGACATCGTTGAATTCCT
AATTGACAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACA
CGCTTATGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTA
CTTCAGAATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGC
CTTGCACTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGC
TTGACCATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCC
TTGCAGGCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTATCGAA
CGACCAGAACTGATGACCTGGAAGGAGCAGATCACAGCATTGGAGCTTCT
GGAGCCACTTATGCGATTGACAAATCAAATACGACGTGAATAGGCCTATG
GCTATCTGCTGAAAGCCATGCAGCTATGTACGCAATCCACGCGGTGTGAT
TCCGCTACGAGTTCAGCCCACTGGTGCC
FMO11948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fem-1-RA | 2679 | CG9025-RA | 113..1175 | 9..1073 | 4690 | 96.8 | Plus |
| Fem-1-RB | 2486 | CG9025-RB | 196..982 | 285..1073 | 3325 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20664174..20664673 | 1073..580 | 2025 | 96 | Minus |
| 2R | 25286936 | 2R | 20666919..20667194 | 284..9 | 1365 | 99.6 | Minus |
| 2R | 25286936 | 2R | 20664794..20665068 | 566..285 | 1000 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:02 has no hits.
FMO11948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:11 Download gff for
FMO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 42..1116 | 1..1078 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:42 Download gff for
FMO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 105..1179 | 1..1078 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:01 Download gff for
FMO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fem-1-RA | 105..1179 | 1..1078 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:01 Download gff for
FMO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20664170..20664677 | 576..1078 | 96 | <- | Minus |
| 2R | 20664786..20665068 | 285..575 | 95 | <- | Minus |
| 2R | 20666919..20667198 | 1..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:42 Download gff for
FMO11948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16551675..16552182 | 576..1078 | 96 | <- | Minus |
| arm_2R | 16552291..16552573 | 285..575 | 95 | <- | Minus |
| arm_2R | 16554424..16554703 | 1..284 | 98 | | Minus |
