FMO11953.5prime Sequence
1130 bp (1024 high quality bases) assembled on 2012-06-21
> FMO11953.5prime
CAGTCGACATGGCAGCTAACAACAACAATAGCATCATACACAACCTGGGC
GCGGGGACGGAGGGCTTGCTCTCCTCCGTGATTGCGTCGACGGGGACTCC
TGGCATGGGATCCTCGCCCGTGCCCTCCAGAGCATCTTCATCGTCCGCCT
CCTCCGCCGCACAGAGTGCTTGGGATCAATTGACGGCGAGTGCCTCCAAC
AACATGTCACCTTCACCCACGGCAGGAGCGCCCACGGTCACGGGACCCAT
TCTACCAGACAATCTGGGCGTAGGAGCGGGCAGTTCACCGGTGGCCAGTT
GCTCCTCCCCCTCGACGCCCACGAAAACACATGCGCCCTCACCGCTGGAG
AGCATGGGCCATACACCGCAAGGTCCGCCAACCTTGGGACCCGGTGGATA
TGGCGAGGAGCTAACCGCCGAGCTGGTAAACCAGGGATGGCGGAAATTCT
GGTCCAAGAGGGAAAACCGCCCATACTATTGGAACAAAGTCACCGGCGAA
TCGCTGTGGGAGATGCCCGGCACCAGACCCTTTGATCCGCTCACCGACCC
TTTGGGCATCTGCCATGCGGGCGGTCCGACGCCGATCATCCCCAATATGC
ACCAGCAGCAACAGCACCAGCATCATCACCTGAAGCGGCGGCCGTCGGAT
GACATGCACATCCATCCCAATCAGCATCATATGGGCGGCGGACCTCCAAT
GAAGAAGTTTGTTCTGGCCGGTCCCTGGGACCTGGAGGTGTGCACCAATG
CCGTTATTGTAGAGCGACCGCCGACACTTCTGCCGCAACCGCATCCTGAG
GTAGAGGCTTTACGGGCAGCCTTCACCATGAAGCTGCTGAAAACCTACGA
AGATCTGTGCATGCGGAGAGAAAATATAAAGGCACCCAGAGATTCCTTCA
ACCGCTGGCTGATGGAACGCAAAGGTGATAGACACCGGCTGCGACCCGCT
GCTGCCAGCAGTTGCATGCCGGAGATCTCCAGCTCATGTTACCGCGAGAT
CATGTCGAAATACCTATTCAGAATAGTGAAGCCAAGTTCACAGGGGATGC
AGGAGGCAGCTTCCCGCTACGCAAGCCGCTAAGCAGAATATAGAATTCCG
ATCCGCGCCGGCGGATCAGACGGGCCTCAT
FMO11953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11399-RB | 4254 | CG11399-RB | 183..1295 | 8..1115 | 5200 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20783496..20784608 | 1115..8 | 4980 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 03:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6888 | 600..679 | 130 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2364 | 600..642 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6839 | 600..642 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2673 | 585..636 | 121 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6855 | 600..679 | 121 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 585..644 | 117 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6763 | 592..644 | 116 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1098..1148 | 585..636 | 113 | 71.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3294..3371 | 600..681 | 112 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1586 | 585..632 | 111 | 72.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1154 | 600..630 | 110 | 83.9 | Plus |
FMO11953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:22 Download gff for
FMO11953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 187..1315 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:17 Download gff for
FMO11953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 178..1306 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:27 Download gff for
FMO11953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11399-RB | 178..1306 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:27 Download gff for
FMO11953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20783485..20784611 | 1..1123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:17 Download gff for
FMO11953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20776585..20777711 | 1..1123 | 97 | | Minus |
