FMO11954.5prime Sequence
1132 bp (1005 high quality bases) assembled on 2012-06-21
> FMO11954.5prime
CAGTCGACATGCTGACCTGGACGCTGTGGTGTGGACTGCTGTTCCTGCTC
TGGATCTACTTTCTGTGGAGCAGGCGCAGATTTTATCTGCTAACGCTAAA
GATACCGGGACCACTTGGATATCCCATTTTGGGCATGGCTCACTGGCTGA
TGCGCAGGGAAGATATCCTCAACGCATTCGGCTGCTTTCTCGACAAGCAC
GGTCCGACAATTTTCTCCTGGCTGGGGCCCATTCCCTTTATGATTGTGAG
TGATCCCCAAGTGGTGCAGGATATCTTCACATCTCCCCACTGCGTCAACA
AGGGCATTATTTACAAGGCAGTGGACGATGGCGCCGGAGTTGGATTATTC
AGCCTGAAGGATCCCCGCTGGAGCATCCATCGGAAGCTGCTGAATCCCGC
CTTCGGCCACAAGGTGCTACTCAGCTTCCTGCCCATTTTCAACCGGGAGA
CGGCCCTTCTGCTCGATCAACTCGAACCACTGCAGGATGACGGCGAGAAG
GATCTCATTCCACTGCTGCAGAGCTTCACCCTGGGAATTGCCACCCAAAC
CACCATGGGCAGCGATGTAAAGGATGAAGAGAGCTTCAGGAGCAATTCCT
TGCTGGGGCGATACCAATGCATCCTGGAAACCATGACAGATATGTGCTTC
TCTCCGTGGCTCAATAGCCGATTTTGCCGGCAGCTGGCTGGAAAGGAATC
GCACTACTACCAGGCCAAAACTGAGATTCGTCAGTTTATTCGGAAGATAA
TTGAGAGAAAGTTGGCCGAGGACGAAATGGGAGCACTACCTTCCATCCAG
TCCAATGATAAAAACCTATTTCTAAATCTGGTCACGGATTTGATGAGACG
AGGAGTGTTTACCCTGAAGAATGTTGAGGATGAGTCGAATATCATCGTTT
TGGAGCTTTTGAGACCACGGCTAATGCAGTGTACTACACCCTGATGTGCT
GGCGATGTTTCGGAATACAGAGAGGGCTTTGAGAAATAAGACGATATCCC
AAACACACGAGACTTTGATGTTATCCTACGCGGAACACCCAGCAATGGGG
TACCTTGACTGATCTTCACGAAATCCATGGAAAGTAATACCCCCTTTTCT
GTCGTTCCGACAAACGTCTCCAGAACCTGGAG
FMO11954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a4-RA | 1651 | CG6802-RA | 70..1193 | 8..1120 | 5090 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12679828..12680190 | 1099..745 | 1035 | 93.2 | Minus |
| 3R | 32079331 | 3R | 12680889..12681088 | 360..161 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 12680650..12680836 | 546..360 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 12681152..12681306 | 162..8 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 12680248..12680375 | 746..619 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 12680418..12680490 | 619..547 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:12 has no hits.
FMO11954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:23 Download gff for
FMO11954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1204 | 8..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:19 Download gff for
FMO11954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1204 | 8..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:28 Download gff for
FMO11954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a4-RA | 70..1204 | 8..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:28 Download gff for
FMO11954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12679793..12680188 | 747..1132 | 93 | <- | Minus |
| 3R | 12680248..12680374 | 620..746 | 100 | <- | Minus |
| 3R | 12680418..12680490 | 547..619 | 100 | <- | Minus |
| 3R | 12680650..12680835 | 361..546 | 100 | <- | Minus |
| 3R | 12680889..12681086 | 163..360 | 100 | <- | Minus |
| 3R | 12681152..12681306 | 8..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:19 Download gff for
FMO11954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8505515..8505910 | 747..1132 | 93 | <- | Minus |
| arm_3R | 8505970..8506096 | 620..746 | 100 | <- | Minus |
| arm_3R | 8506140..8506212 | 547..619 | 100 | <- | Minus |
| arm_3R | 8506372..8506557 | 361..546 | 100 | <- | Minus |
| arm_3R | 8506611..8506808 | 163..360 | 100 | <- | Minus |
| arm_3R | 8506874..8507028 | 8..162 | 100 | | Minus |
