Clone FMO11955 Report

Search the DGRC for FMO11955

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11321-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11955.5prime Sequence

453 bp (446 high quality bases) assembled on 2012-06-21

> FMO11955.5prime
TGGTCTTCCCAAGGCGCCTGCTCTGCCTCCCAAGGCGAAGAGCACTCCCG
AGCCGGACTACGAGATCATCGAATTCTCCAGCCAGCAGTACTCCAACGAA
CCGATGAAGACCACAGTGATCAGAACCAAGACACCAGATAACAAACTAAA
GTGCACCTTGTGCGGTTCCCAGAATCCCTGGGTAACCTGTGCCGAGTGCG
CCGGCCAAATCTTTTGCGCCTCCTGCGACGACATGTTCCACAAGCATCCC
AAACGTAAGCAGCACATGAGAAAGGCTGTGGAGCAGGGCACACCGCCGAT
TCCGCCAAAGGCACAGGCCGGTGGTGGGGCACCACCACCAGTGGCACCTC
CACGACGCAGCAAACGAGGCCTTTTGACACCGTTTCTGGGCCGCAAGGAT
CAGATGCTGCCGCCGCCCTCGCCCACGCCCTCGCACAAGTCGCTGGTCGG
CTG

FMO11955.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11321-RJ 8906 CG11321-RJ 265..717 1..453 2235 99.6 Plus
CG11321-RI 9009 CG11321-RI 245..697 1..453 2235 99.6 Plus
CG11321-RH 2907 CG11321-RH 245..697 1..453 2235 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6770133..6770273 275..135 705 100 Minus
2L 23513712 2L 6770335..6770471 137..1 670 99.3 Minus
2L 23513712 2L 6769953..6770083 403..273 655 100 Minus
2L 23513712 2L 6769687..6769739 453..401 250 98.1 Minus
Blast to na_te.dros performed on 2014-11-28 03:11:15 has no hits.

FMO11955.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:24 Download gff for FMO11955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RB 246..698 1..453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:22 Download gff for FMO11955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RH 240..692 1..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:30 Download gff for FMO11955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11321-RH 245..697 1..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:30 Download gff for FMO11955.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6769953..6770081 275..403 100 <- Minus
2L 6770134..6770270 138..274 100 <- Minus
2L 6770335..6770471 1..137 99   Minus
2L 6769687..6769736 404..453 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:22 Download gff for FMO11955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6769953..6770081 275..403 100 <- Minus
arm_2L 6770134..6770270 138..274 100 <- Minus
arm_2L 6769687..6769736 404..453 98 <- Minus
arm_2L 6770335..6770471 1..137 99   Minus