FMO11956.5prime Sequence
1149 bp (1062 high quality bases) assembled on 2012-06-21
> FMO11956.5prime
CAGTCGACATGGGCAGTCCATACTACCGCGACATGGATGAGCCAACCAGT
CCGGCCGGAGCGGGTCACCATCGCAGCCGGAGCGCCAGCAGACCACCGAT
GGCCCATGCCATGGACTATCCAAGAACCCGCTACCAATCGCTGGATCGCG
GTGGACTCGTGGATCCCCATGATCGCGAGTTCATACCCATTCGGGAGCCC
CGCGACCGCTCCAGGGACAGATCCCTCGAACGGGGCCTGTACCTAGAGGA
CGAGCTCTATGGCAGATCAGCGCGTCAGAGCCCCAGCGCCATGGGTGGAT
ACAATACGGGCATGGGCCCCACATCGGATCGAGCTTATTTGGGCGACCTG
CAGCATCAGAACACCGACCTGCAGCGGGAGCTGGGGAACCTGAAGCGGGA
ACTGGAGCTGACTAACCAGAAGCTGGGCAGCTCGATGCACAGCATCAAGA
CCTTCTGGTCGCCGGAGCTCAAGAAGGAGCGAGCACTGCGCAAGGAGGAG
AGCGCCAAGTACAGTCTGATCAACGATCAGTTGAAGCTGCTCAGCACGGA
GAACCAGAAACAAGCTATGCTGGTGCGCCAGCTGGAGGAGGAGCTGCGCC
TGCGAATGCGACAGCCCAACCTGGAGATGCAGCAGCAGATGGAGGCGATC
TACGCGGAGAACGACCACTTGCAGCGGGAGATCAGCATCCTGCGCGAGAC
GATCAAGGATCTAGAGTGCCGGGTGGAGACCCAGAAGCAAACACTGATTG
CCCGCGACGAGAGTATCAAGAAGCTGCTGGAAATGCTGCAGGCCAAGGGA
ATGGGCAAAGAGGAGGAGCGTCAGATGTTCCAGCAGATGCAGGCCATGGC
CCAGAAGCAGATGTACAATAACTACACGGGCGCCAGCGGAAGCAGTCCTC
CATTGCCGGACATTATTGGCCAGTACTACGGGCCGGGAAGTCTGGGTCCG
GGCCCCTGTCCTACGGTTCGGGCATGGTACGGCCGCCCGGGTACGATCTT
GTACGGCCCATCGACCTCGACGGCAGCTGGTGGATACGGACTGTATGATC
GCAGAATCTACGACCGTGCCAGCAACCTCGCCCATCGGAAAAGGCGCTAA
TGATTGCGACTGCTCGCACCATTACATGAGGTTCACGGCATCCGGACTT
FMO11956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brp-RJ | 11909 | CG42344-RJ | 940..2036 | 9..1099 | 5230 | 99 | Plus |
| brp-RM | 9436 | CG42344-RM | 549..1400 | 9..860 | 4260 | 100 | Plus |
| brp-RH | 5562 | CG42344-RH | 39..890 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9510221..9510654 | 124..557 | 2170 | 100 | Plus |
| 2R | 25286936 | 2R | 9510827..9511079 | 553..805 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 9522935..9523182 | 858..1099 | 760 | 93.6 | Plus |
| 2R | 25286936 | 2R | 9509890..9510005 | 9..124 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 9511143..9511199 | 804..860 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:11:19 has no hits.
FMO11956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:25 Download gff for
FMO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RF | 1161..2266 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:24 Download gff for
FMO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 935..2045 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:31 Download gff for
FMO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brp-RJ | 935..2045 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:31 Download gff for
FMO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9509885..9510004 | 1..123 | 97 | -> | Plus |
| 2R | 9510221..9510654 | 124..557 | 100 | -> | Plus |
| 2R | 9510832..9511078 | 558..804 | 100 | -> | Plus |
| 2R | 9511144..9511199 | 805..860 | 100 | -> | Plus |
| 2R | 9522938..9523191 | 861..1107 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:24 Download gff for
FMO11956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5397390..5397509 | 1..123 | 97 | -> | Plus |
| arm_2R | 5397726..5398159 | 124..557 | 100 | -> | Plus |
| arm_2R | 5398337..5398583 | 558..804 | 100 | -> | Plus |
| arm_2R | 5398649..5398704 | 805..860 | 100 | -> | Plus |
| arm_2R | 5410443..5410696 | 861..1107 | 94 | | Plus |
