Clone FMO11958 Report

Search the DGRC for FMO11958

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:58
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmamo-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11958.5prime Sequence

1148 bp (1026 high quality bases) assembled on 2012-06-21

> FMO11958.5prime
CAGTCGACATGGGCAGTGAGCACTACTGCTTGAGGTGGAACAATTACCAA
TCCAACCTGTTAGGGGTGTTTAGTCAATTACTACAAGACGGGAGCCTGGT
GGACGTCACACTAGTTTGTTCAGAGGGCACATCCATCAGAGCCCATAAGG
TGGTCCTCTCGGCTTGTTCCTCGTACTTCCAGAGCCTGTTCCTGGAGCAC
CCCGAAGGACATCTAATTGTGATATTGAAGGACGTCCGTTTTGCCGAGCT
GCAAACCTTAGTTGAATTCATGTACAAGGGCGAGGTGAACGTGCAATATT
GTCAGTTGTCCGCGCTGCTCAAGACAGCCGAATCCCTCAAGGTCAAGGGC
CTGGCCGAGATGACGAACCAGAATACGACGCTGCGCGAACCGGAACGGGA
ACCGGATCGCTTGCGTCCGCAGGGCGGCGGCGGTAGCGGCGGATCCGCCC
ACAAGGCGGCCGACAGTCCGGCGGCCGCGCTTGATGCCACAGCGGCCACA
CAGGCGGCGACTGCCACGGCAACGGCAACTGCCGCGGCGGCAACATCGAC
CTCAACCTCAGCAACATCTGCGGCGGCGACGGCAGCAGCGACAGCAGCAA
CATCTGCGTCCACAACGGCAACGGCGGCGGCGGGGAGTAGTAATACAACA
ACTACAACGGCGGCAACCACAACAGCAACCTGTGCCACAGCAGCAACATC
TACGGCAGCAACATCCTCATCTTCGTCCGTGACATCAGCAGCAGCAGCCG
CAGCAGCAGCCGCATCAGCATCTGGTGTTGCGCACTCGGAGGAGGCGACC
TCGTCATCATCGTCAACTGGCGGGCAGAAGCGGGAGGCTAGCGATCGCAG
CAGTCCCACGCCCGCCAAACGATCGTCGCGAATGCATCCGGCGGACAAGT
GATGTGGCAGAGGATCGGGAACAGGAGCAAACCAGGCGGACGAGCTGCTA
AGCGAGAGCTGCTCGGTCGCACTTAAGGACGAGAGGATGACGATGTGATG
ACTAAATGAAACGAGGAGACAAACTGAGGGTCCCGATGGAGACGATGACC
ACAGAATGAGAGGAGACCGCCCCATGCCCATTGGAATTCCTACCAAGACC
AATTGCCAGTCTAAAATGCGCCGCGACATACTAAGTCATGCCATCCAG

FMO11958.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
mamo-RC 4583 CG45477-RC 1969..3063 5..1085 4930 97.7 Plus
mamo-RG 8765 CG45477-RG 1740..2834 5..1085 4930 97.7 Plus
mamo-RF 4535 CG45477-RF 864..1958 5..1085 4930 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13884592..13885227 971..340 3000 99.2 Minus
X 23542271 X 13885307..13885502 343..148 980 100 Minus
X 23542271 X 13901480..13901627 152..5 740 100 Minus
Blast to na_te.dros performed 2014-11-28 03:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2535 539..772 371 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2532 456..715 353 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6952 535..768 352 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2661 486..772 331 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6941 490..721 331 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2490 575..772 323 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6923 559..763 317 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..7020 487..773 308 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6944 517..745 307 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2507 572..774 303 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6899 592..772 303 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6928 580..777 294 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2833 535..773 276 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2990 553..771 265 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..3031 511..770 256 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6842 642..772 234 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6864 646..770 230 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2443 646..773 228 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2604..2889 490..766 218 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2665 490..719 207 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..7088 490..760 207 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6823 664..774 204 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6806 688..772 200 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2406 670..772 193 67 Plus
roo 9092 roo DM_ROO 9092bp 1061..1163 526..628 191 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2591..2876 489..774 181 54.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 5..194 529..715 176 59.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9035..9224 529..715 176 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1061..1145 538..622 173 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1071..1163 647..739 168 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1514..1588 642..716 150 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9031..9280 442..687 140 54.5 Plus
roo 9092 roo DM_ROO 9092bp 1073..1163 613..712 137 65 Plus
roo 9092 roo DM_ROO 9092bp 1069..1160 634..721 135 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1505..1589 538..621 134 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1500..1602 554..657 129 61.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 90..250 521..687 126 57.1 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9045..9225 419..602 118 55.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3251..3333 645..724 111 61.4 Plus

FMO11958.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:18 Download gff for FMO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
mamo-RE 801..1832 1..1023 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:05 Download gff for FMO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
mamo-RE 801..1832 1..1023 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:17 Download gff for FMO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
mamo-RF 861..1892 1..1023 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:17 Download gff for FMO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13884534..13885225 342..1023 98 <- Minus
X 13885309..13885500 150..341 100 <- Minus
X 13901483..13901630 1..149 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:05 Download gff for FMO11958.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13778567..13779258 342..1023 98 <- Minus
arm_X 13779342..13779533 150..341 100 <- Minus
arm_X 13795516..13795663 1..149 98   Minus