FMO11958.5prime Sequence
1148 bp (1026 high quality bases) assembled on 2012-06-21
> FMO11958.5prime
CAGTCGACATGGGCAGTGAGCACTACTGCTTGAGGTGGAACAATTACCAA
TCCAACCTGTTAGGGGTGTTTAGTCAATTACTACAAGACGGGAGCCTGGT
GGACGTCACACTAGTTTGTTCAGAGGGCACATCCATCAGAGCCCATAAGG
TGGTCCTCTCGGCTTGTTCCTCGTACTTCCAGAGCCTGTTCCTGGAGCAC
CCCGAAGGACATCTAATTGTGATATTGAAGGACGTCCGTTTTGCCGAGCT
GCAAACCTTAGTTGAATTCATGTACAAGGGCGAGGTGAACGTGCAATATT
GTCAGTTGTCCGCGCTGCTCAAGACAGCCGAATCCCTCAAGGTCAAGGGC
CTGGCCGAGATGACGAACCAGAATACGACGCTGCGCGAACCGGAACGGGA
ACCGGATCGCTTGCGTCCGCAGGGCGGCGGCGGTAGCGGCGGATCCGCCC
ACAAGGCGGCCGACAGTCCGGCGGCCGCGCTTGATGCCACAGCGGCCACA
CAGGCGGCGACTGCCACGGCAACGGCAACTGCCGCGGCGGCAACATCGAC
CTCAACCTCAGCAACATCTGCGGCGGCGACGGCAGCAGCGACAGCAGCAA
CATCTGCGTCCACAACGGCAACGGCGGCGGCGGGGAGTAGTAATACAACA
ACTACAACGGCGGCAACCACAACAGCAACCTGTGCCACAGCAGCAACATC
TACGGCAGCAACATCCTCATCTTCGTCCGTGACATCAGCAGCAGCAGCCG
CAGCAGCAGCCGCATCAGCATCTGGTGTTGCGCACTCGGAGGAGGCGACC
TCGTCATCATCGTCAACTGGCGGGCAGAAGCGGGAGGCTAGCGATCGCAG
CAGTCCCACGCCCGCCAAACGATCGTCGCGAATGCATCCGGCGGACAAGT
GATGTGGCAGAGGATCGGGAACAGGAGCAAACCAGGCGGACGAGCTGCTA
AGCGAGAGCTGCTCGGTCGCACTTAAGGACGAGAGGATGACGATGTGATG
ACTAAATGAAACGAGGAGACAAACTGAGGGTCCCGATGGAGACGATGACC
ACAGAATGAGAGGAGACCGCCCCATGCCCATTGGAATTCCTACCAAGACC
AATTGCCAGTCTAAAATGCGCCGCGACATACTAAGTCATGCCATCCAG
FMO11958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mamo-RC | 4583 | CG45477-RC | 1969..3063 | 5..1085 | 4930 | 97.7 | Plus |
mamo-RG | 8765 | CG45477-RG | 1740..2834 | 5..1085 | 4930 | 97.7 | Plus |
mamo-RF | 4535 | CG45477-RF | 864..1958 | 5..1085 | 4930 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13884592..13885227 | 971..340 | 3000 | 99.2 | Minus |
X | 23542271 | X | 13885307..13885502 | 343..148 | 980 | 100 | Minus |
X | 23542271 | X | 13901480..13901627 | 152..5 | 740 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2535 | 539..772 | 371 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2532 | 456..715 | 353 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6952 | 535..768 | 352 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2661 | 486..772 | 331 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6941 | 490..721 | 331 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2490 | 575..772 | 323 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6923 | 559..763 | 317 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7020 | 487..773 | 308 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 517..745 | 307 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2507 | 572..774 | 303 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 592..772 | 303 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6928 | 580..777 | 294 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2833 | 535..773 | 276 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2990 | 553..771 | 265 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3031 | 511..770 | 256 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6842 | 642..772 | 234 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6864 | 646..770 | 230 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2443 | 646..773 | 228 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2889 | 490..766 | 218 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2665 | 490..719 | 207 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..7088 | 490..760 | 207 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6823 | 664..774 | 204 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6806 | 688..772 | 200 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 670..772 | 193 | 67 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 526..628 | 191 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2591..2876 | 489..774 | 181 | 54.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 5..194 | 529..715 | 176 | 59.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9035..9224 | 529..715 | 176 | 59.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1145 | 538..622 | 173 | 67.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1163 | 647..739 | 168 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1588 | 642..716 | 150 | 66.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9031..9280 | 442..687 | 140 | 54.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 613..712 | 137 | 65 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1069..1160 | 634..721 | 135 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1589 | 538..621 | 134 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1602 | 554..657 | 129 | 61.9 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 90..250 | 521..687 | 126 | 57.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9045..9225 | 419..602 | 118 | 55.1 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3251..3333 | 645..724 | 111 | 61.4 | Plus |
FMO11958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:18 Download gff for
FMO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mamo-RE | 801..1832 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:05 Download gff for
FMO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mamo-RE | 801..1832 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:17 Download gff for
FMO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mamo-RF | 861..1892 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:17 Download gff for
FMO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13884534..13885225 | 342..1023 | 98 | <- | Minus |
X | 13885309..13885500 | 150..341 | 100 | <- | Minus |
X | 13901483..13901630 | 1..149 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:05 Download gff for
FMO11958.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13778567..13779258 | 342..1023 | 98 | <- | Minus |
arm_X | 13779342..13779533 | 150..341 | 100 | <- | Minus |
arm_X | 13795516..13795663 | 1..149 | 98 | | Minus |