Clone FMO11959 Report

Search the DGRC for FMO11959

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32982-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11959.5prime Sequence

1175 bp (1052 high quality bases) assembled on 2012-06-21

> FMO11959.5prime
CAGTCGACATGCTCATGCACACAACATCAATTTCCACAACGTCGACGGCC
ACCATGACCAACTCATCGTCCTCCGCCACGCCCACACCCGGGTCGACTTC
CTCCAACAACAGTGCCACGCTCGACGCGCTGCACCAGCAACAACAGCAGC
AGCACCAGCAGCATCAGCTGCAGCAACAACTGCAGCAGTTGCACACGAAC
GCCGCAAACAATTCACGGCCCCCCTCACGTGCCCCCTCCATTCTGGACAG
TCCGACCCTGGCGCGTGTGGAGCGGGCTCGTCTGCGACTGGAGCAGCAGG
AGCGGGAGCGGGAACGGGAGCGTAGCAGCCAGCGGGAGGTGGGCGGCGGC
AGCGGAGGAGGCGGCGGCGGTGGTAGCAGCACTGGCACTGGCAGCACCGC
CACAACCATGAATCGTGAGGATAGCCTGGAGCGCAGTATTTTGGATCCCA
AGAAAGAAACGGCGCCCTGGCATCAGATGTGGACGCACATGAAACGCCTC
TCGCACGCCTCCAAAGTCAATTCGACGAGCAGTCTGACCGCCCAGAAAAC
CGATGTGGGCGTGGGCCATCATCCAAACATGACACCAAATGCAACAGCAA
CAACAACGGCAACGGGAACAATGACATCAACGCCCGGAAAATGCATTCTA
TTTCCGGATAAGACGGCCTCCCTGAAAGCTCTATGTATACGCAACAGGTG
TACTTCAGGCCCGATATGCAATCCTTGCTGGCAGGACGCATTCCGGTGGC
CTCCATGACAGGACCCATTAAACGCGGACTGCTCTGGCAGCAAAGGGATC
GGCTCTTCTCTCGCTGGAAGGAGCGATACTTTGTGCTCACTCGTGACTAC
TTGCACTGCTTCAAAAGAGCCTCGGGATCGGCCAATGAACGTGCCTCGGA
TATGGGACAGTTTATCTTCAAGGTCAAGCTGGTGGACGTGGAGAAGGTGA
GTGACTGATCGCGCTCCTACAGCGCCATTGGTCTGCTACTGGGTCGCGAG
GGTCGTGTTCTACTCGCTGCGATGATGGCCTCGAGGATTGATCGAGCTGC
TGAGATTGCACAATGACCTCCAGGAAGCGCAAACGGACCCTGAAGATGGC
CCAAAGGACCCAGATCCCGGCCTCATGGCTGCCTCCCGTTTCGCCATGCT
TCGCCTGCATTCCAGCAATTTGAAC

FMO11959.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32982-RD 3241 CG32982-RD 347..1517 9..1172 5350 97.9 Plus
CG32982-RE 3397 CG32982-RE 458..1168 9..718 3530 99.9 Plus
CG32982-RF 2931 CG32982-RF 467..910 9..452 2220 100 Plus
CG32982-RE 3397 CG32982-RE 1214..1673 719..1172 1820 94.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9127023..9127466 9..452 2220 100 Plus
2L 23513712 2L 9135116..9135384 451..718 1295 99.6 Plus
2L 23513712 2L 9154658..9154765 718..825 540 100 Plus
2L 23513712 2L 9156497..9156596 825..924 500 100 Plus
2L 23513712 2L 9161129..9161252 921..1040 410 94.4 Plus
Blast to na_te.dros performed 2014-11-28 03:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2435 583..642 138 70 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 425..575 481..633 129 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1561 573..638 127 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2418 583..631 119 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1115..1157 592..634 116 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2370 582..631 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2499 582..631 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6782 582..631 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6803 582..631 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1578 574..631 110 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6872 583..631 110 69.4 Plus

FMO11959.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:19 Download gff for FMO11959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32982-RD 333..1506 9..1175 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:07 Download gff for FMO11959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32982-RD 347..1520 9..1175 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:19 Download gff for FMO11959.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32982-RD 347..1520 9..1175 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:19 Download gff for FMO11959.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9161131..9161268 923..1053 93 -> Plus
2L 9127023..9127466 9..452 100 -> Plus
2L 9135118..9135384 453..718 99 -> Plus
2L 9154659..9154765 719..825 100 -> Plus
2L 9156498..9156594 826..922 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:07 Download gff for FMO11959.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9154659..9154765 719..825 100 -> Plus
arm_2L 9156498..9156594 826..922 100 -> Plus
arm_2L 9161131..9161268 923..1053 93 -> Plus
arm_2L 9135118..9135384 453..718 99 -> Plus
arm_2L 9127023..9127466 9..452 100 -> Plus