FMO11959.5prime Sequence
1175 bp (1052 high quality bases) assembled on 2012-06-21
> FMO11959.5prime
CAGTCGACATGCTCATGCACACAACATCAATTTCCACAACGTCGACGGCC
ACCATGACCAACTCATCGTCCTCCGCCACGCCCACACCCGGGTCGACTTC
CTCCAACAACAGTGCCACGCTCGACGCGCTGCACCAGCAACAACAGCAGC
AGCACCAGCAGCATCAGCTGCAGCAACAACTGCAGCAGTTGCACACGAAC
GCCGCAAACAATTCACGGCCCCCCTCACGTGCCCCCTCCATTCTGGACAG
TCCGACCCTGGCGCGTGTGGAGCGGGCTCGTCTGCGACTGGAGCAGCAGG
AGCGGGAGCGGGAACGGGAGCGTAGCAGCCAGCGGGAGGTGGGCGGCGGC
AGCGGAGGAGGCGGCGGCGGTGGTAGCAGCACTGGCACTGGCAGCACCGC
CACAACCATGAATCGTGAGGATAGCCTGGAGCGCAGTATTTTGGATCCCA
AGAAAGAAACGGCGCCCTGGCATCAGATGTGGACGCACATGAAACGCCTC
TCGCACGCCTCCAAAGTCAATTCGACGAGCAGTCTGACCGCCCAGAAAAC
CGATGTGGGCGTGGGCCATCATCCAAACATGACACCAAATGCAACAGCAA
CAACAACGGCAACGGGAACAATGACATCAACGCCCGGAAAATGCATTCTA
TTTCCGGATAAGACGGCCTCCCTGAAAGCTCTATGTATACGCAACAGGTG
TACTTCAGGCCCGATATGCAATCCTTGCTGGCAGGACGCATTCCGGTGGC
CTCCATGACAGGACCCATTAAACGCGGACTGCTCTGGCAGCAAAGGGATC
GGCTCTTCTCTCGCTGGAAGGAGCGATACTTTGTGCTCACTCGTGACTAC
TTGCACTGCTTCAAAAGAGCCTCGGGATCGGCCAATGAACGTGCCTCGGA
TATGGGACAGTTTATCTTCAAGGTCAAGCTGGTGGACGTGGAGAAGGTGA
GTGACTGATCGCGCTCCTACAGCGCCATTGGTCTGCTACTGGGTCGCGAG
GGTCGTGTTCTACTCGCTGCGATGATGGCCTCGAGGATTGATCGAGCTGC
TGAGATTGCACAATGACCTCCAGGAAGCGCAAACGGACCCTGAAGATGGC
CCAAAGGACCCAGATCCCGGCCTCATGGCTGCCTCCCGTTTCGCCATGCT
TCGCCTGCATTCCAGCAATTTGAAC
FMO11959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32982-RD | 3241 | CG32982-RD | 347..1517 | 9..1172 | 5350 | 97.9 | Plus |
CG32982-RE | 3397 | CG32982-RE | 458..1168 | 9..718 | 3530 | 99.9 | Plus |
CG32982-RF | 2931 | CG32982-RF | 467..910 | 9..452 | 2220 | 100 | Plus |
CG32982-RE | 3397 | CG32982-RE | 1214..1673 | 719..1172 | 1820 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9127023..9127466 | 9..452 | 2220 | 100 | Plus |
2L | 23513712 | 2L | 9135116..9135384 | 451..718 | 1295 | 99.6 | Plus |
2L | 23513712 | 2L | 9154658..9154765 | 718..825 | 540 | 100 | Plus |
2L | 23513712 | 2L | 9156497..9156596 | 825..924 | 500 | 100 | Plus |
2L | 23513712 | 2L | 9161129..9161252 | 921..1040 | 410 | 94.4 | Plus |
Blast to na_te.dros performed 2014-11-28 03:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2435 | 583..642 | 138 | 70 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 425..575 | 481..633 | 129 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1561 | 573..638 | 127 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2418 | 583..631 | 119 | 71.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1157 | 592..634 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2370 | 582..631 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2499 | 582..631 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6782 | 582..631 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6803 | 582..631 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1578 | 574..631 | 110 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6872 | 583..631 | 110 | 69.4 | Plus |
FMO11959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:19 Download gff for
FMO11959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RD | 333..1506 | 9..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:07 Download gff for
FMO11959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RD | 347..1520 | 9..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:19 Download gff for
FMO11959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32982-RD | 347..1520 | 9..1175 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:19 Download gff for
FMO11959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9161131..9161268 | 923..1053 | 93 | -> | Plus |
2L | 9127023..9127466 | 9..452 | 100 | -> | Plus |
2L | 9135118..9135384 | 453..718 | 99 | -> | Plus |
2L | 9154659..9154765 | 719..825 | 100 | -> | Plus |
2L | 9156498..9156594 | 826..922 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:07 Download gff for
FMO11959.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9154659..9154765 | 719..825 | 100 | -> | Plus |
arm_2L | 9156498..9156594 | 826..922 | 100 | -> | Plus |
arm_2L | 9161131..9161268 | 923..1053 | 93 | -> | Plus |
arm_2L | 9135118..9135384 | 453..718 | 99 | -> | Plus |
arm_2L | 9127023..9127466 | 9..452 | 100 | -> | Plus |