FMO11960.5prime Sequence
1029 bp (847 high quality bases) assembled on 2012-06-21
> FMO11960.5prime
CAGTCGACATGAAAAACATCACCAGCTCGAGCACTTGCAGCACTGGGCTG
CTGCAATTGCAGAACAACCTGAGCTGCAGCGAGTTGGAAGTTGCCGAGAA
GACAGAACAACAGGCAGTTGGACCCGGCACCATACCATCACCGTGGACAC
CAGTGAATGCCGGTCCTCCAGGCGCACTTGGATCGGCAGACACAAATGGC
ATGGTGGATAGCAAAAACCTGGATGTCGGTGATATGAGCGATGACGAAAA
GGACTTGTCATCCGCTGATGCCGAAGGTGTATGGAGTCCAGATATCGAGC
AGAGCTTTCAAGAGGCTTTATCTATATATCCGCCGTGCGGACGTAGAAAA
ATCATTTTATCCGACGAGGGTAAAATGTACGGTCGCAACGAGCTAATCGC
ACGATATATAAAACTGCGCACAGGCAAAACGAGAACCAGGAAGCAAGTCA
GTTCGCACATCCAAGTGCTGGCTCGCCGTAAACTCCGCGAGATCCAGGCG
AAAATCAAAGTGCAATTCTGGGCAACCTGGGACTACAGCCAAGCACGTCC
CCAAGACATCCAAGCCCTTCCCCCAGCCCGCCGTATCCAGCTGGCAAAAC
GTCGACTGCGGTTTTCCGGGGACGAAACTGGAATTCCGCCCTCACAATTT
GCCCTGGGAAGGACAAGCCATTGCCACGCACAATTCCGCTTTACTCGAGT
TTACGGCGTTCATGGAAATCCAGAGAGATGAAATTTATCACCGGCATCTA
TTCGTTCAACTTGCGGCAAGCCATCCTTTCCGATCCATTGCTTGAGACTG
TTGATATACGGCAATATTCGACAGTTTCCGGAGAAATCTGGGGGCCTTAA
GATCTCTACGAAAAGGGTCCACAGAATGCGTTTTACCTAGTTAATGCTGG
GCGGACCTGAATACCGATCTTACACCGGCAGCGAAACGGGTGATTTCTAT
TGGCGTACCAGCCATACGAAAGCCAACGAGATGTCCTGCTCGTGTGCTCC
ACATCGTTTGCTCCTTTGGCATGTAGGTG
FMO11960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sd-RM | 5331 | CG8544-RM | 790..1808 | 8..1021 | 4480 | 97.2 | Plus |
| sd-RI | 3280 | CG8544-RI | 698..1716 | 8..1021 | 4480 | 97.2 | Plus |
| sd-RH | 3237 | CG8544-RH | 655..1673 | 8..1021 | 4480 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15819996..15820136 | 243..383 | 705 | 100 | Plus |
| X | 23542271 | X | 15820422..15820553 | 381..512 | 660 | 100 | Plus |
| X | 23542271 | X | 15823311..15823482 | 561..735 | 635 | 94.9 | Plus |
| X | 23542271 | X | 15819593..15819724 | 115..243 | 580 | 97.7 | Plus |
| X | 23542271 | X | 15814186..15814295 | 8..117 | 550 | 100 | Plus |
| X | 23542271 | X | 15823750..15823910 | 795..950 | 525 | 95.7 | Plus |
| X | 23542271 | X | 15823619..15823681 | 736..796 | 215 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:10:52 has no hits.
FMO11960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:20 Download gff for
FMO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RI | 264..1297 | 1..1029 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:09 Download gff for
FMO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RH | 648..1681 | 1..1029 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:21 Download gff for
FMO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RH | 648..1681 | 1..1029 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:21 Download gff for
FMO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15814179..15814295 | 1..117 | 96 | -> | Plus |
| X | 15819596..15819723 | 118..242 | 97 | -> | Plus |
| X | 15819996..15820134 | 243..381 | 100 | -> | Plus |
| X | 15820423..15820553 | 382..512 | 100 | -> | Plus |
| X | 15823187..15823227 | 513..556 | 93 | -> | Plus |
| X | 15823308..15823482 | 557..735 | 96 | -> | Plus |
| X | 15823619..15823681 | 736..796 | 96 | -> | Plus |
| X | 15823752..15823924 | 797..963 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:09 Download gff for
FMO11960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15708212..15708328 | 1..117 | 96 | -> | Plus |
| arm_X | 15713629..15713756 | 118..242 | 97 | -> | Plus |
| arm_X | 15714029..15714167 | 243..381 | 100 | -> | Plus |
| arm_X | 15714456..15714586 | 382..512 | 100 | -> | Plus |
| arm_X | 15717220..15717260 | 513..556 | 93 | -> | Plus |
| arm_X | 15717341..15717515 | 557..735 | 96 | -> | Plus |
| arm_X | 15717652..15717714 | 736..796 | 96 | -> | Plus |
| arm_X | 15717785..15717957 | 797..963 | 94 | -> | Plus |
