FMO11962.5prime Sequence
1134 bp (1022 high quality bases) assembled on 2012-06-21
> FMO11962.5prime
CAGTCGACATGTCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACT
TCGTCCCTAAGTCAACACCATCCACATCAACAGCAACAGTTACAACCCCC
ACAGCAGCAACAACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGT
CGCAGCAGCAGCAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAA
CAGCAGCAGCAGATACTCCCACATCAACATTTGCAGCACCTGCACAAGCA
TCCGCATCAGCTGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGC
AACAGCAGCAACACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGT
AGCAGCAATCCGGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAA
GGATGTCAATGATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAG
CAGCAGCGATTCAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATG
CAGCAACCACCGCCGCCCCCACCTCAACACTCCAATAATGGAGGCGAGAT
GGGCTACTTGTCAGCAGGCACGACCACGACGACGTCGGTGTTAACGGTAG
GCAAGCCTCGGACGCCAGCGGAGCGGAAACGGAAGCGAAAAATGCCTCCA
TGTGCCACTAGTGCGGATGAGGCGGGGAGTGGCGGTGGCTCTGGCGGAGC
AGGAGCAACCGTTGTTAACAACAGCAGCCTGAAGGGCAAATCATTGGCCT
TTCGTGATATGCCCAAGGTAAACATGAGCCTGAATCTGGGCGATCGTCTG
GGAGGATCTGCATGAAGCGGAGTAGAGCCGGTGGCGCCGGAAGCGGGGGA
GGTGGCGCTGGTTCCGGTTCTGGAAGCGGTGGCGGCAAAGCGCCCGCCTG
ATGCTGCCAGTCAGCGACAACAAGAAGATCAACGACTATTTCATAAGCAG
CAAACGGGCGTGGGGCGTCGGTGTGCAAGGTGGTGCGGGAGCAATTGGCT
GGGCCTTCGAGGATCACATACGGAAGGTGCAGCAGTCACCCTCATCCGCC
CAGCATCAGCAAACGGGCGGACACACATAGGGAAGCGGTGTTTGGAACGG
AGGCAAGTGCAGCGTTCCCTTTGGTCAACAGTGC
FMO11962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tlk-RM | 7490 | CG34412-RM | 394..1503 | 7..1112 | 5045 | 97.7 | Plus |
| tlk-RG | 7243 | CG34412-RG | 1941..3049 | 8..1112 | 5040 | 97.7 | Plus |
| tlk-RN | 4355 | CG34412-RN | 395..1502 | 9..1112 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3781655..3782756 | 9..1105 | 4820 | 97.3 | Plus |
Blast to na_te.dros performed 2014-11-28 03:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2545 | 63..292 | 465 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2988 | 58..474 | 390 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6951 | 63..289 | 387 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7016 | 63..324 | 375 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2781 | 63..474 | 367 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..7200 | 63..472 | 306 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7112 | 63..312 | 218 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2480 | 429..588 | 143 | 60.6 | Plus |
FMO11962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:27 Download gff for
FMO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RG | 1941..3049 | 8..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:34 Download gff for
FMO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RM | 388..1503 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:38 Download gff for
FMO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RM | 388..1503 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:38 Download gff for
FMO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3781655..3782762 | 9..1112 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:34 Download gff for
FMO11962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3675688..3676795 | 9..1112 | 97 | | Plus |
