Clone FMO11963 Report

Search the DGRC for FMO11963

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:63
Vector:pMK33-CFH-BD
Associated Gene/Transcriptoho23B-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11963.5prime Sequence

269 bp (269 high quality bases) assembled on 2012-06-21

> FMO11963.5prime
CAGTCGACATGGAGAACGACGCCGGTGAGAATGTTGATCTGTACGTGCCC
CGCAAATGCTCGGCGTCCAACAGGATCATCCACGCCAAGGATCACGCCTC
CGTGCAGCTGAGCATCGTGGATGTGGACCCCGAGACCGGTCGCCAGACCG
ACGGTTCCAAGACCTACGCCATCTGCGGCGAGATCCGTCGCATGGGCGAG
TCCGACGACTGCATCGTGCGTCTGGCCAAGAAGGACGGCATCATTACCAA
GGCAAGCTTTCTAGACCAT

FMO11963.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpS21-RD 415 CG2986-RD 99..341 9..251 1215 100 Plus
RpS21-RE 494 CG2986-RE 116..358 9..251 1215 100 Plus
RpS21-RB 619 CG2986-RB 75..317 9..251 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2856376..2856569 58..251 970 100 Plus
2L 23513712 2L 2856256..2856305 9..58 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:11:37 has no hits.

FMO11963.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:28 Download gff for FMO11963.5prime
Subject Subject Range Query Range Percent Splice Strand
oho23B-RB 109..366 1..263 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:35 Download gff for FMO11963.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS21-RB 68..325 1..263 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:40 Download gff for FMO11963.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS21-RB 68..325 1..263 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:40 Download gff for FMO11963.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2856249..2856305 1..58 93 -> Plus
2L 2856377..2856576 59..260 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:35 Download gff for FMO11963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2856249..2856305 1..58 93 -> Plus
arm_2L 2856377..2856576 59..260 98   Plus