FMO11966.5prime Sequence
791 bp (791 high quality bases) assembled on 2012-06-21
> FMO11966.5prime
CAGTCGACATGGGAACCATGACCAAGGACTACGACTATCTGCTAAAGGTT
CTACTGGTGGGCGACAGCGATGTGGGCAAGCACGAGATTCTCTCAAACCT
GGAGGATCCCTCCACGGAGAGTCCCTTCTGCAGTGGGAACGCCTACAAGA
CGACCACCATCCTGCTGGAGGGCAAGCGGGTGAAGCTGCAGCTGTGGGAC
ACCTCCGGCCAGGGACGCTTCTGCACGATCATTCGCTCCTATTCGCGCGG
CGCCCAGGGCATCATCCTCGTCTACGACATCACCAACAAGTGGAGCTTCG
ACGGTATCGATCGGTGGCTCAAGGAGGTCGACGAGCACGCCCCAGGAATT
CCGAAGGTTCTTGTCGGGAATCGCCTGCACTTGGCCTTCAAGCGACAGGT
GGCGGCCAAACAGGCCGAGACCTACGCCAGCCGCAACAATATGTCCTGCT
TCGAGATATCGCCTCTCTGCAACTTCAACATCCGCGAGTCCTTTTGCGAA
CTGGCGCGGATGGCCCTGCATCGCAACGGCATGGAGCACATCTGGCGCAG
CAATAAGGTGCTGTCGCTTCAGGAATTGTGCTGCAGGACAATTGTGCGAA
GGACGAGCGTGTATGCGATCGATTCGCTGCCGCTGCCGCCGTCGGTGAAG
TCGACGCTCAAGTCATACGCGCTGACCACGTCCCAGTGCTTCAATTCACT
GACCCAGAGCTCCAAGAGCAAGAACCGCTGCAAGACGCCGACGAGCAGCA
GTCGGAATAGCTGTGCGATCGCGGCAAGCTTTCTAGACCAT
FMO11966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RC | 1449 | CG1900-RC | 110..876 | 7..773 | 3835 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 249..1015 | 7..773 | 3835 | 100 | Plus |
| Rab40-RB | 1618 | CG1900-RB | 413..1045 | 141..773 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 558..334 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460369..12460584 | 773..558 | 1080 | 100 | Minus |
| X | 23542271 | X | 12461456..12461650 | 335..141 | 975 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 141..7 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 287..168 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:48 has no hits.
FMO11966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:30 Download gff for
FMO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 238..1011 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:41 Download gff for
FMO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 242..1015 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:47 Download gff for
FMO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RA | 242..1015 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:47 Download gff for
FMO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12460369..12460583 | 559..773 | 100 | <- | Minus |
| X | 12460989..12461211 | 336..558 | 100 | <- | Minus |
| X | 12461456..12461649 | 142..335 | 100 | <- | Minus |
| X | 12461736..12461875 | 1..141 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:41 Download gff for
FMO11966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12354402..12354616 | 559..773 | 100 | <- | Minus |
| arm_X | 12355022..12355244 | 336..558 | 100 | <- | Minus |
| arm_X | 12355769..12355908 | 1..141 | 98 | | Minus |
| arm_X | 12355489..12355682 | 142..335 | 100 | <- | Minus |
