FMO11969.5prime Sequence
821 bp (821 high quality bases) assembled on 2012-06-21
> FMO11969.5prime
CAGTCGACATGTTGTCGAATCAAGATCTCAGTCTGAGTTTAATCGTTATC
CTGGCCGTAACTACGGTTGGTCAGGCCGCGCCTTCCATATCAAGGGTGGT
CAATGGTACGGACTCCAGTGTGCTGAAATATCCTTTCGTGGTATCCCTAA
GGAGCTACGATGGCTCGCATTCCTGCGGTGGTTCTATTATTTCAAAACAT
TTTGTGATGACCGCTGCTCATTGCACCAATGGTCGACCTGCGGATACCCT
ATCAATTCAGTTTGGAGTGACCAATATTAGTGCCATGGGTCCGAATGTGG
TGGGCATAAAGAAGATAATCCAGCACGAAGACTTTGATCCCACTCGCCAA
AATGCAAATGACATCTCGCTGCTGATGGTGGAGGAACCTTTTGAGTTCGA
TGGCGTCTCTGTGGCCCCGGTGGAACTGCCAGCTCTGGCTTTTGCTGTGC
CTCAATCGGATGCTGGAGTCGAAGGAGTGCTCATCGGTTGGGGTCTCAAT
GATACTTATGGAAGTGTGCAGGACACCCTACAGGAGGTTTCCCTGAAGAT
TTACTCGGATGAAGAGTGCACCAGCCGGCACAATGGCCAAACGGATCCCA
AATATCACATATGCGGAGGAGTAGACGAAGGAGGAAAGGGACAGTGCAGT
GGAGATTCGGGCGGACCCCTCATCTACAATGGCCAGCAAGTGGGCATCGT
GTCGTGGAGCATTAAGCCCTGCACCGTGGCTCCCTATCCGGGTGTCTACT
GTAAGGTTAGCCAGTACGTTGACTGGATCAAAAGCAACCAAATCATATCG
GCTGCAAGCTTTCTAGACCAT
FMO11969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12951-RA | 857 | CG12951-RA | 7..801 | 9..803 | 3975 | 100 | Plus |
| CG16749-RA | 873 | CG16749-RA | 94..779 | 96..781 | 1075 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9329641..9330004 | 503..140 | 1820 | 100 | Minus |
| 3R | 32079331 | 3R | 9329279..9329578 | 803..504 | 1500 | 100 | Minus |
| 3R | 32079331 | 3R | 9330191..9330325 | 143..9 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 9330979..9331166 | 781..594 | 670 | 90.4 | Minus |
| 3R | 32079331 | 3R | 9331322..9331662 | 501..161 | 445 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:11:57 has no hits.
FMO11969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:32 Download gff for
FMO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..798 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:48 Download gff for
FMO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..801 | 5..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:52 Download gff for
FMO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12951-RA | 1..801 | 5..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:52 Download gff for
FMO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9329641..9330003 | 141..503 | 100 | <- | Minus |
| 3R | 9330194..9330325 | 9..140 | 100 | | Minus |
| 3R | 9329279..9329578 | 504..803 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:48 Download gff for
FMO11969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5155001..5155300 | 504..803 | 100 | <- | Minus |
| arm_3R | 5155363..5155725 | 141..503 | 100 | <- | Minus |
| arm_3R | 5155916..5156047 | 9..140 | 100 | | Minus |
