Clone FMO11971 Report

Search the DGRC for FMO11971

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:71
Vector:pMK33-CFH-BD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11971.5prime Sequence

361 bp (269 high quality bases) assembled on 2012-06-21

> FMO11971.5prime
CAGTCGACATGCTTTTAGGATTCAGCCTTGAGATCGTGCCGCAGATCACT
CATCTAGAAAAACTAGAGCTGAATGTCCGAATGCATTCCAGTATCCTGGT
CGAGCTGTGTAAACTGAATCCAAACCTACGAAGACTCATTCTAAGGAATT
CCGAAATATTTGGCAGATTATCGGATATAGTACCTCATTGCAATCAACTG
GAAATATCTGAGCTTTTGTGATGAAAAGAGGTAGATGCATCCGAGTACGT
AGCCCCTGGCCCAATTTGCCGCAACCTTAAGTCCATTTAATTCTGGGGTG
GCCGAGCATCCTCAGGGGAACCGCTTGGGGAAGCTTTTTTAATTCGCTTT
CCAAGAACCCC

FMO11971.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32107-RE 3956 CG32107-RE 508..832 18..358 1230 93.8 Plus
CG32107-RD 3892 CG32107-RD 508..832 18..358 1230 93.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12860478..12860739 275..9 1090 97.4 Minus
Blast to na_te.dros performed on 2014-11-28 03:11:30 has no hits.

FMO11971.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:27 Download gff for FMO11971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32107-RA 1..299 9..317 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:31 Download gff for FMO11971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32107-RC 511..800 18..317 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:37 Download gff for FMO11971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32107-RD 508..797 18..317 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:37 Download gff for FMO11971.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12860441..12860743 1..317 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:31 Download gff for FMO11971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12853541..12853843 1..317 94   Minus