Clone FMO11976 Report

Search the DGRC for FMO11976

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11608-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11976.5prime Sequence

500 bp (264 high quality bases) assembled on 2012-06-21

> FMO11976.5prime
CAGTCGACATGCAGTCATTTCTCATCCAAATGCTGCCGATATTGCTTGGA
ATTTTTTTTGTGTGGCTATCGAACAGCACAGCCTTATCTGAGGTGAACTG
GAAGAATCACTCGCTTCACCGCATTCATCATCGCACAAAAGTAATAACTG
CGGTGGACATCATAAGCAGTCACAACTATCCGGTGCAAACACACACTGTG
GTCACCAGGGATGGCTACATACTGTCGGTCTTCCGAATCCCATCATCACA
GCTATGTGCAAGTAGCGAACCAAAAGCCAGTTGTTTTTGATTAACCATGG
CATGACTGGCTCCGCGGAACTCATGGGCTTCTTAACTTGGACCCGCGGAA
ATGGAACTGGCCTTTTTTTGTTGGGCCGAATGCTTGGTTACAATGTGTGG
GCTGAATAAACCGGTCCCCGGGAACCCGGGAACTCCCAGGAAAACCATCC
CCAAACTTCAAGGCCTGGGCTCCTTGGAATTTTTGGCGTTTTTACTTGGG

FMO11976.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11608-RB 1379 CG11608-RB 1..456 9..492 1605 92.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12638735..12638899 152..318 735 98.8 Plus
3R 32079331 3R 12638481..12638566 9..94 430 100 Plus
3R 32079331 3R 12638618..12638681 91..154 320 100 Plus
Blast to na_te.dros performed 2014-11-28 03:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 758..815 374..318 125 70.7 Minus
F-element 4708 F-element F 4708bp 1396..1442 123..168 106 72.3 Plus

FMO11976.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:33 Download gff for FMO11976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11608-RB 1..355 9..374 96 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:53 Download gff for FMO11976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11608-RB 1..355 9..374 96 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:56 Download gff for FMO11976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11608-RB 1..355 9..374 96 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:56 Download gff for FMO11976.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12638481..12638564 9..92 100 -> Plus
3R 12638620..12638679 93..152 100 -> Plus
3R 12638736..12638963 153..394 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:53 Download gff for FMO11976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8464203..8464286 9..92 100 -> Plus
arm_3R 8464342..8464401 93..152 100 -> Plus
arm_3R 8464458..8464685 153..394 93 -> Plus