Clone FMO11978 Report

Search the DGRC for FMO11978

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31010-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11978.5prime Sequence

788 bp (788 high quality bases) assembled on 2012-06-21

> FMO11978.5prime
CAGTCGACATGGGATGCCAAAGCTGTACATCCCTAGTGACACATCCTAGT
TATACAATTAGGCAACATTATCCAGGTCCTTTAATCACCTACGACGGGGA
GGCGCGATGTGAGCCGCGTTTTATTCGATTTTCGGACTTAACCTTGAGCA
CAATGGAGCTTATCTTCAATGCTTATGGAGACAATGATGATGATGGAACG
GATGAAATGAATGAAATGAATGAAGTGTGTGAAAAGAAGGTAGATGTGGA
GGAAAAGTGTGACAAGCAGAGAGAGGAGCCGGCGTGTGGTAATCCAAGGA
AGATCTTTGGCTGCCAAACAAATGCACCAATGCACAACTGTAGGTTGAAT
GGTGGCAGGGAGGAATCCGACTTGGCAGACGATTCACTCGTCGACAAGGA
GCTCCGAGCCCTGGAGGATCGTGCCAGGGGTATATACGAAATACATATCG
AATCTTTTCCAGATTCGCCGTCTTGGGACTGCCTGAAACCTGCGGAGAAA
CTGCGCTTTCAATGGAAAGCTTCTACTGGAGATGATCTGATGAAAAGTCC
TTATGAAAATTTCGCATTGAGTTTTACCAGAAGTTTCCTCGAAGCTTTTC
CCCTTGCCACATGTGCCACTGTTCGAAAGGAGGAAAAAATCGCGTGGTGC
AAGTTAGATCGCTGCCAGCGAATGCCGTTCATACTGCAGGCTCTACTGTA
CCACGTCGCCATCGGTGCCATCGATCCCGAAGATCACTGTGCTGTTCGTG
AACTTTTTCACAAGTTGAGAGCAAGCTTTCTAGACCAT

FMO11978.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31010-RB 1360 CG31010-RB 216..977 9..770 3810 100 Plus
CG31010-RA 1295 CG31010-RA 151..912 9..770 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30705145..30705906 770..9 3810 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:12:11 has no hits.

FMO11978.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:35 Download gff for FMO11978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 117..884 3..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:57 Download gff for FMO11978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 145..912 3..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:59 Download gff for FMO11978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 145..912 3..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:59 Download gff for FMO11978.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30705145..30705912 3..770 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:57 Download gff for FMO11978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26530867..26531634 3..770 99   Minus