Clone FMO11979 Report

Search the DGRC for FMO11979

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15653-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11979.5prime Sequence

544 bp (544 high quality bases) assembled on 2012-06-21

> FMO11979.5prime
CAGTCGACATGGTTGGACTCAAGTTTCCGTCGAACCGAACACTGGGCAAT
ATTTGTGTCTACGGTGCGGTGGCCTCCATATCCGCTGTGATGTACATGAA
ATGGAAGATGGAGGATCGGGTGAAATCCGCAGAGTACTACAAACTGGCCT
TGAAGGCACTGCGGAGCCATCGAGGAGCAGTTGGTCTCCTGGGTGAACCC
ATCAAGGACTCTGGCATCGATCTGTCCAACGCCAACAACAATTGCAATGC
GGAGGAGGCGCGTTGTGAGGTGGCTGTGCGGGGCAGCAAGGATAAAGGAA
CTTTATACTTTTGGGCGTCCAATCAGCCGGATAGAGGCTGGCTGATCGAT
CGACTGGAGCTGGAAACAAAACTCAACCCAGAGAAAACGATTTTTGCTTA
AAAAATCCGAGGAACTAACCTTCGATCTGCCCGAGAGTATAACCAAAACA
AACTGCCCAGCAAGTTGATTCCCAATGTCATTCTATCCCGCATCGGATCA
ACAACCCAGAAACACCTTTCAAAGGGAAGCTTTCTAAAACCATT

FMO11979.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15653-RA 711 CG15653-RA 80..594 9..529 2425 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21060179..21060468 298..9 1450 100 Minus
2R 25286936 2R 21059918..21060124 506..296 855 98.1 Minus
Blast to na_te.dros performed on 2014-11-28 03:12:15 has no hits.

FMO11979.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:36 Download gff for FMO11979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15653-RA 35..556 1..529 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:00 Download gff for FMO11979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15653-RA 73..594 1..529 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:01 Download gff for FMO11979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15653-RA 73..594 1..529 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:01 Download gff for FMO11979.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21059897..21060122 298..529 96 <- Minus
2R 21060180..21060474 1..297 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:00 Download gff for FMO11979.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16947402..16947627 298..529 96 <- Minus
arm_2R 16947685..16947979 1..297 98   Minus