Clone FMO11980 Report

Search the DGRC for FMO11980

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10116-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11980.5prime Sequence

892 bp (892 high quality bases) assembled on 2012-06-21

> FMO11980.5prime
CAGTCGACATGCAGACCGGAGTACAACTAGCTTTGTTTTTGACCCTCACA
ATAGCAGCGGTCTACGGAGAGACTGGATTTTTCCTGAACACACGTCGCGT
CCAGGAAAATGCACAGCCAATCGAGGCGGAAGTGGAGGCTCTGGTAAGGA
GCTCCTTCTATGCCGCAGATCCAACAGTCGTAACTATTCCCCGCTGGCTT
GGCAATATCTCCTCGCCGGAAATCCCCGCGGTGGTTTCTGCCCGACTTCA
GCAGCAGGACAGCAATATAATCAGTGTTGATCTATCTGAAGCCAATGATG
AAACAGAGATCATCGACAGCGTGGCCAGTTTGGTGATCGTTCTACACAAT
CAATTCGATATGCCACTGGATCGCATTCTGGTCGTGGGCTTCGCGGAGGG
CGCCCATTTGGCAGGTGGGGTGGCTGCCAAGGTGCAGCAGGACCTGGGTC
GCCAGTTGTCGCAGATTACAGCTCTTGATCCTTCCTCTGGCGCGGAACTA
GACCACAAGCTGTCCCAAGCCGATGCTGAGTTTGTGGAGGTTGTGCACAC
AAATGCCGGAGGAGAGGGCACTTGGGAGCGACTGGGTCATGTGGACTACT
ATCCCAACGGAGGACAAACGCAGCCTGGCTGCACCACGGACTCCTGTTCG
CACGAGAGAGCCTTCGAGCTGCTCGCCGAGATGTGGTCGCCGGAGAATGA
CTTTGTGAGCGCCCGTTGTGGTTCGGTGGAGACTTTAAGTGCCTCCAGCT
GCCGCTGGTCCACACACAAAATGGGCCAAAAACAGGAGGAGGAGCAGCCT
GCCTCATGCATCTATTTCCTGAGACCCGACAGTCCTCACCCTTCTCCCGT
GGAGCATACTTCATAAGCTTCCTGGCAAGCTTTCTAGACCAT

FMO11980.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10116-RA 918 CG10116-RA 1..867 9..874 4295 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13456259..13456955 874..179 3420 99.7 Minus
3L 28110227 3L 13457010..13457128 178..60 595 100 Minus
3L 28110227 3L 13457187..13457238 60..9 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:12:18 has no hits.

FMO11980.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:36 Download gff for FMO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10116-RA 1..873 9..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:03 Download gff for FMO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10116-RA 1..873 9..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:02 Download gff for FMO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10116-RA 1..873 9..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:02 Download gff for FMO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13456253..13456955 179..881 99 <- Minus
3L 13457010..13457127 61..178 100 <- Minus
3L 13457187..13457246 1..60 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:03 Download gff for FMO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13449353..13450055 179..881 99 <- Minus
arm_3L 13450110..13450227 61..178 100 <- Minus
arm_3L 13450287..13450346 1..60 93   Minus