FMO11980.5prime Sequence
892 bp (892 high quality bases) assembled on 2012-06-21
> FMO11980.5prime
CAGTCGACATGCAGACCGGAGTACAACTAGCTTTGTTTTTGACCCTCACA
ATAGCAGCGGTCTACGGAGAGACTGGATTTTTCCTGAACACACGTCGCGT
CCAGGAAAATGCACAGCCAATCGAGGCGGAAGTGGAGGCTCTGGTAAGGA
GCTCCTTCTATGCCGCAGATCCAACAGTCGTAACTATTCCCCGCTGGCTT
GGCAATATCTCCTCGCCGGAAATCCCCGCGGTGGTTTCTGCCCGACTTCA
GCAGCAGGACAGCAATATAATCAGTGTTGATCTATCTGAAGCCAATGATG
AAACAGAGATCATCGACAGCGTGGCCAGTTTGGTGATCGTTCTACACAAT
CAATTCGATATGCCACTGGATCGCATTCTGGTCGTGGGCTTCGCGGAGGG
CGCCCATTTGGCAGGTGGGGTGGCTGCCAAGGTGCAGCAGGACCTGGGTC
GCCAGTTGTCGCAGATTACAGCTCTTGATCCTTCCTCTGGCGCGGAACTA
GACCACAAGCTGTCCCAAGCCGATGCTGAGTTTGTGGAGGTTGTGCACAC
AAATGCCGGAGGAGAGGGCACTTGGGAGCGACTGGGTCATGTGGACTACT
ATCCCAACGGAGGACAAACGCAGCCTGGCTGCACCACGGACTCCTGTTCG
CACGAGAGAGCCTTCGAGCTGCTCGCCGAGATGTGGTCGCCGGAGAATGA
CTTTGTGAGCGCCCGTTGTGGTTCGGTGGAGACTTTAAGTGCCTCCAGCT
GCCGCTGGTCCACACACAAAATGGGCCAAAAACAGGAGGAGGAGCAGCCT
GCCTCATGCATCTATTTCCTGAGACCCGACAGTCCTCACCCTTCTCCCGT
GGAGCATACTTCATAAGCTTCCTGGCAAGCTTTCTAGACCAT
FMO11980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10116-RA | 918 | CG10116-RA | 1..867 | 9..874 | 4295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13456259..13456955 | 874..179 | 3420 | 99.7 | Minus |
3L | 28110227 | 3L | 13457010..13457128 | 178..60 | 595 | 100 | Minus |
3L | 28110227 | 3L | 13457187..13457238 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:12:18 has no hits.
FMO11980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:36 Download gff for
FMO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10116-RA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:03 Download gff for
FMO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10116-RA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:02 Download gff for
FMO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10116-RA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:02 Download gff for
FMO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13456253..13456955 | 179..881 | 99 | <- | Minus |
3L | 13457010..13457127 | 61..178 | 100 | <- | Minus |
3L | 13457187..13457246 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:03 Download gff for
FMO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13449353..13450055 | 179..881 | 99 | <- | Minus |
arm_3L | 13450110..13450227 | 61..178 | 100 | <- | Minus |
arm_3L | 13450287..13450346 | 1..60 | 93 | | Minus |