FMO12001.5prime Sequence
1047 bp (1002 high quality bases) assembled on 2012-06-25
> FMO12001.5prime
CAGTCGACATGCAGACACAGACACACACCACCACAGACCGACATGGCTAT
AGCCTGCGCTTTTCGCCTTTCGAGGCTAACTACTTGCTGCTAGCTACAAG
CCAACTGTACGGTCTTGCTGGAGGTGGTTCCCTCTTTCTGCTGGAACAGA
ACTCCAACACAAATTCCTCATCCACAGATGGCCAGAGTCTCGGAGAGCTG
TGCCGCCTAGAGTGGTCCGATGGATTGTTCGACGTCGCCTGGTGTCCGTA
TGCCGCCGATATCGCCGCCACTGCCTCCGGAGATGGATCGCTTCAGATCT
GGTGCGGATTGGATGGCGAATCGGCGAGCAACCAGCTGACGCCGAAACAG
CCGCTGATCTGCCTGCAGGAGCACAAGAACGAGGTGTACAGCCTGGACTG
GGGCGAGAAGTGGAACTACCACACGCTGCTCTCGGGCAGCTGGGATTGTA
CACTGAAATTGTGGGACTGCAACAGACAGAACTCCATCACCACATTTGTG
GGCCACAACGATCTGATCTACGGGGCCAAGTTCTCGCCCCTGATCGCCAA
TCTGTTTGCAAGCGTAAGTACCGATGGACATCTTAACTTATGGAACTCTC
TTGACTTTGCAGGTAAACCCCTGATGAGCATCGAGGCGCATGCGAGTGAG
GCACTATGCTGCGACTGGTCGCACTTCGATCGCAATGTCCTGGTCACTGG
AGGTTCGGACGGTCTGATCCGCGGCTGGGATCTGCGCAAGATGAGGACGC
ACGTCTTTGAGCTGTACTCTGGAGAATTCGCTGTCCGGCGATTGGCCTGT
TCACCGCACTCGGCAGCGGTCTTGGCATCGGCCAATTATGATTTTACCAC
AAGGATTTGGAATCTGGAGCGTGGTGAGTCCGCCCAGGAGGTCAATGCGC
GGCACACGGAGTTCGTGTGCGGATTGGAATTGGAATCCCACAGGACCAAT
CAGTTGGCCGACTGGTGGCTGGGACTCGTTGGCCAACGTTTATAACCCCC
GCAGTGTCTGAACGGTGATCTGGTCGTCGCAAGCCTTTCTAGAACAT
FMO12001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex7-RB | 1391 | CG6486-RB | 77..1093 | 9..1028 | 4960 | 99.3 | Plus |
| Pex7-RA | 1443 | CG6486-RA | 129..1145 | 9..1028 | 4960 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8649705..8650460 | 99..854 | 3780 | 100 | Plus |
| 3L | 28110227 | 3L | 8650540..8650713 | 852..1028 | 665 | 94.4 | Plus |
| 3L | 28110227 | 3L | 8649547..8649638 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:20:15 has no hits.
FMO12001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:36 Download gff for
FMO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6486-RB | 77..1093 | 9..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:56 Download gff for
FMO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1145 | 9..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:57 Download gff for
FMO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex7-RA | 129..1145 | 9..1028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:57 Download gff for
FMO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8649547..8649638 | 9..100 | 100 | -> | Plus |
| 3L | 8649707..8650459 | 101..853 | 100 | -> | Plus |
| 3L | 8650542..8650707 | 854..1022 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:56 Download gff for
FMO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8642647..8642738 | 9..100 | 100 | -> | Plus |
| arm_3L | 8642807..8643559 | 101..853 | 100 | -> | Plus |
| arm_3L | 8643642..8643807 | 854..1022 | 95 | -> | Plus |
