Clone FMO12002 Report

Search the DGRC for FMO12002

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:2
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNC2alpha-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12002.5prime Sequence

1134 bp (1018 high quality bases) assembled on 2012-06-25

> FMO12002.5prime
CAGTCGACATGCCATCGAAAAAGAAAAAATACAACGCACGCTTTCCGGCG
GGTCGCATCAAGAAGATCATGCAAAGCGACGAGGAAATCGGGAAGGTGGC
CCAGGCGGTGCCTGTTATCATCTCACGCACGCTGGAGCTCTTCGTGGAGT
CGCTGCTGACCAAGACGCTGCGCATCACGAATGCGCGCAACGCCAAGACG
CTATCGCCATCGCACATGAGGCAGTGTATCGTATCCGAGAAACGCTTTGA
CTTCCTCAAGGAGCTGGTCCGCAACATACCCGACATCAGTGTGGCCGAGG
AGGCCGCCTACAACGAGGACGATGTGTTACGCAGCTCGCCAGAGGAACAG
TATCCAGATTCAGACACGCCATATGATCTTAGCCTGCCATCGACGTCAAT
GCGCTCGCAGGCGAACGGCACAGCTGCCTACATGCGCTCCATGAGTCTGA
ACAACGGAGCCGGATCGGGCGGAGGAGCCGCAGCCACCAAGCGGCAGTTT
CAGTCGCAGCACTCCACCCAGGAAACTCCCACCACCAGCACCACCCTGCC
CGCCAAGCTGGCCCGCTCCGGGTCCATGCCGGCCTACACGCCACGGGGCA
GACCGCCCAATCACCTCAAGAAACAGTCGGTGCAGCTCGATACTGCCATA
CCCGCCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTCAAGATCGA
CTACAGCCACGTGCAAATGCCGACGGCGAACCTGTGCACACCGGACGCCT
CTGATTCTGGGTCAGGATCGGGCGCCGGATCTGGAGCTTTTAACTTCGAC
ATAGCTGCTCCGGTGATCAATATCGATCTGACGAATATCGTGGCCGGTGG
AGCACCTGGCAGTGGTGTGCCCCCGCTCTATTGATTACCAGCGGCCACGC
CGGGGGACAACATAATGTGAACCAATGGCTGGAAGAGCAGCGCTCCCATC
ATTCCAAGGCCACAGCGGCATCAGCGACCCCCACCTGAACCGTTTTTCGA
ATTAGAACGAGACTTTGACAATATGCAAGCTTCCTAGACCATCGTTTGGC
GGTGCGGGCAAGGTAAGTGGTCATATCATATCATATCATATCCTAAGTCA
CACACTTAGCCTAGAGATCTTGCTCATAACATGG

FMO12002.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
NC2alpha-RA 1235 CG10318-RA 96..1117 9..1024 4810 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21670495..21671475 50..1024 4425 98.4 Plus
2R 25286936 2R 21670247..21670289 9..51 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:13:00 has no hits.

FMO12002.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:08 Download gff for FMO12002.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 80..1101 9..1024 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:28 Download gff for FMO12002.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 96..1117 9..1024 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:23 Download gff for FMO12002.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2alpha-RA 96..1117 9..1024 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:23 Download gff for FMO12002.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21670247..21670288 9..50 100 -> Plus
2R 21670496..21671475 51..1024 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:28 Download gff for FMO12002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17557752..17557793 9..50 100 -> Plus
arm_2R 17558001..17558980 51..1024 98   Plus