Clone FMO12004 Report

Search the DGRC for FMO12004

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6353-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12004.5prime Sequence

494 bp (494 high quality bases) assembled on 2012-06-25

> FMO12004.5prime
CAGTCGACATGGAGGTGGAATTCAGTAGGGAGAACTTCCTGCTGCCGGAG
ATGAAGTACGAGTACCTGGATCACACGGCGGATGTTCAAATCCACGGATG
GGGATCGTCGCTGAAAGAGGCGTTCGAACAGTGCGGAGTGGCCATGTTTG
GATATATGACCGAACTGGATTACGTGTCCGTGGAGCAGTGCTTTGAAATC
GAAGCGCATGGAGATGATCTGGAGAGCTTACTCTTTCACTTTCTGGACGA
GCTGCTGTTCCTGTTCTCTGCCGAACCGTATCTGGTGTGCAAGAAGCTGG
AGATCACCAAGTTCGATGTGGAAAACTTCGAGATTTCCTGCCATTGTTAC
GGGGAACCATTTGAGCTGGGGAAACATCCGCAGGGCACCGAAGTGAAGGC
AATCACATACTCGGCCATGCAAATCATTCAGGACGTGGAGGCCAGCAACT
ACGAGGTGTTCGTGATAATTGACATTGCAAGCTTTCTAGACCAT

FMO12004.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6353-RA 1222 CG6353-RA 109..576 9..476 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21661832..21662219 476..89 1940 100 Minus
3R 32079331 3R 21662810..21662864 63..9 275 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:13:07 has no hits.

FMO12004.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:10 Download gff for FMO12004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6353-RA 90..562 1..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:32 Download gff for FMO12004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6353-RA 104..576 1..476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:25 Download gff for FMO12004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6353-RA 104..576 1..476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:25 Download gff for FMO12004.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21661832..21662219 89..476 100 <- Minus
3R 21662719..21662743 64..88 100 <- Minus
3R 21662810..21662869 1..63 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:32 Download gff for FMO12004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17487554..17487941 89..476 100 <- Minus
arm_3R 17488441..17488465 64..88 100 <- Minus
arm_3R 17488532..17488591 1..63 93   Minus