FMO12005.5prime Sequence
1131 bp (1024 high quality bases) assembled on 2012-06-25
> FMO12005.5prime
CAGTCGACATGCGTGGACTAGTGTTACTGGTGGGACTGATCTTCTTACTG
GCTCAGGGATCCCTTGCCTCGGATTACTTTTCATCCATTACGGGCCTGGA
GGATCTCTTGCATACGGAGCAGTATCTTACAAGGGAACTGAGGTCAAAGG
TTAATGCAATCCAAACTGCACTACAACAGCTCGAGAGCGAGCTATCCTCC
ATCGAAAAGGAGCACACCATGGCCGCGTCGGACACGGAGAACTACCTGAC
CAACCCGGTGAATGTGTACCGCCTGATGAAGCGCCTTCACACGGACTGGT
CTCTGATGGAGGGACGAGTGCAGCTTATGGCTGAGGAGATGAATTTCAAT
GCTACCAGGGAGTACGGCCTGAGCTACCCCAGCCAGGAGGACGTGGAGGG
GGCTGCTCTGGCTCTCGTCCGCCTGCAGAGCACCTACAAACTGGACGTGG
CCCAGGTGGCCCAGGGCATTCTGAATGGCGTCAAATACGGCTCCGATATG
AGCTGGCAGGATTGCTTCGAGCTGGGTCAACAACTCTTTGAAATGGAGGA
CTACAACAACACCAAGGTCTGGCTGCGGGAATCGATGGAACGCTTGCGAC
GTCAGACCAGCCACGCCCCCAGCCACCTAGCGCCCACTAGCGGACCGGAT
ACGGTTACCCTCAACAAAATGGAGGCGACGGCCAAGAGTTTGTTCCAATT
GGGCGATTTCGACACTGCTTTCGAGCTGAGCCAGCGAGTCCTTCAGTTCG
ATCCCAAACGCATAAAGAACTGGCATCTCGGTGACAAGGGAACGGCGCCT
CCGGAGGACATCGATGATGTGTATCTACCAAAGCACTCGGACTCCTACAG
CCTATCGCAGGAGTTCGCCAAATACGAAAAGTGTGCCGAGGAGAGGTGCA
TCCAATTGTCCGCCAGGAGTTGCGGTGTCCCTATAGCCGGGTAAACATCC
GTATCGCTTTCCGGCGCCACTGAAGCTGGAGGACCACAGCCTGGAATCCC
TATGTGGCAACCTTTCCATGATATATACTTGAATCCCGGAAAATCTCGAT
GCTTCCGGGAATGGTTGTTCTCGCCATGCATTCGCCTCCAGTGAATCCTT
GTCCGGGCGACGCTCAAGTCCGCTTTTCGGG
FMO12005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE1-RA | 1737 | CG9728-RA | 105..1230 | 9..1131 | 5000 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30498094..30498307 | 703..490 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 30500044..30500222 | 187..9 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 30499036..30499192 | 342..186 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30498830..30498977 | 490..343 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30497873..30498022 | 851..702 | 735 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30497643..30497816 | 1025..852 | 620 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:11 has no hits.
FMO12005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:11 Download gff for
FMO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 1..1007 | 9..1014 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:36 Download gff for
FMO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 99..1111 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:27 Download gff for
FMO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE1-RA | 99..1111 | 1..1014 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:27 Download gff for
FMO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30500044..30500228 | 1..187 | 97 | | Minus |
| 3R | 30497653..30497816 | 852..1014 | 95 | <- | Minus |
| 3R | 30497873..30498021 | 703..851 | 99 | <- | Minus |
| 3R | 30498095..30498306 | 491..702 | 100 | <- | Minus |
| 3R | 30498830..30498977 | 343..490 | 100 | <- | Minus |
| 3R | 30499036..30499190 | 188..342 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:36 Download gff for
FMO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26324552..26324699 | 343..490 | 100 | <- | Minus |
| arm_3R | 26323595..26323743 | 703..851 | 99 | <- | Minus |
| arm_3R | 26324758..26324912 | 188..342 | 100 | <- | Minus |
| arm_3R | 26323817..26324028 | 491..702 | 100 | <- | Minus |
| arm_3R | 26323375..26323538 | 852..1014 | 95 | <- | Minus |
| arm_3R | 26325766..26325950 | 1..187 | 97 | | Minus |
