Clone FMO12008 Report

Search the DGRC for FMO12008

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9917-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12008.5prime Sequence

927 bp (927 high quality bases) assembled on 2012-06-25

> FMO12008.5prime
CAGTCGACATGCACAGGACATATGTAAGCCATGCGATATACGCCATTTGG
CTGGTTATATTCGCCACTGCCGGCATAATGGCCCAGCTAGACCTGGATCA
GATCCAGACCCAGCTGCCCGACCAGCTGAGGAAGTCAAACTTTAGCGTGA
ACGACGCCAAGGAGCTATTTCGCAACAAATGCATCGAGGTGGCCGGCGAG
GAGGCGGGCGTCGAGGCATACGGCGAGATCGAGTCCGGATTCATGGTGCT
AACCGAGTGCCTCAATGGCATTGTCAACTACACGGCAATGCAGCAGGAGA
TACAGGAAGCGTCGCCCAAGGGCGAACTGGATGTGGTCTTCAACAAGTAC
TGCAGCCGGCGTTCGAATGCCGTCGAGTGTGTGGATGCGTTCACGGCCAA
ACTGGTGCCCTGTCTGGTGCAGGAGGAGCGCGAGGGCCAGGATGTCATTA
AGCAGATCATCCAGAGTCTGCTCAACTTTGTGTGCCACAAGGATGGCGAT
CAGATAGCCCTGTTCATTGCCGAAAAGGGACCCGAATGCATTGAGTCCCA
GAAGGACAACATTCAGCAGTGCGTGAACAGCACGTTCTCCGAGTACCTGA
ACGTGTCGGATCTGCAGGACAACCGCATCAGGAGCATGCCCAAGCTGACG
GTCGGTCAGAAACAGTGCGACGAGATGCTGACTCTGCAGGCGTGTGTGGT
CCGTAAACTGGAGCAATGCTCGGACATAACACCGGCGAATCTCGTCGAGT
CCATGTTCAACTTCATTCGGAACCAAACGATGTGCCGTGACAATCAGAAA
TCGCCGCTCGTTGCGGCTGCCGCCAGCGGAGGGAGTCTGGTATTCCATCA
AGTGTGGACCCATGTGGGCATCTTTTTGCTAATCCTGCGATTCGCTCTAC
AAAGTCTTCTGCAAGCTTTCTAGACCA

FMO12008.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9917-RB 1726 CG9917-RB 203..1106 8..910 4480 99.8 Plus
CG9917-RA 1801 CG9917-RA 278..1181 8..910 4480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16322059..16322954 903..8 4465 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 03:13:15 has no hits.

FMO12008.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:13 Download gff for FMO12008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9917-RA 289..1204 1..918 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:38 Download gff for FMO12008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9917-RA 271..1186 1..918 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:29 Download gff for FMO12008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9917-RA 271..1186 1..918 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:29 Download gff for FMO12008.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16322046..16322957 1..918 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:38 Download gff for FMO12008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16216079..16216990 1..918 98   Minus