FMO12009.5prime Sequence
1046 bp (1021 high quality bases) assembled on 2012-06-25
> FMO12009.5prime
CAGTCGACATGATTTGTGTAGCGGGCGTGAGGCTCCAGCTGCCAACAGCT
CCGCCCACCTACAGCATTTATAGCTCCATCTTTCCGCTGAGACGAGGTCG
TGGACTGACTGGACTGAAGAATCTGGGCAACACCTGCTATATGAACAGCA
TACTGCAGTGCCTGAGCAACACGCCTCAGTTGACCGAGTACTGCATTTCG
GACAAATACAAGAATTACATCAGCAGAAGCAACAAGACTAATGGCCAGGT
GATCGAAGAGGTGGCTGCACTCATCAAGGAGCTCTGGAATGGACAGTACA
AGTGTGTGGCCAGCCGAGATTTGAGGTACGTTGTGGGCCAGTACCAGAAG
ATCTTCCGCGGCGTTGACCAGCAGGACTCACACGAATTCCTCACCATCCT
GATGGACTGGCTGCACTCGGATCTCCAGACCCTACATGTGCCCCGTCAGC
GGGAGATGATCAGTGCGTCGGAAAAGGCTTGGCTGGAATTTACCAAGGCG
AAGGAGAGCATGATTCTGCATTTATTCTATGGCCAAATGAAGAGCACTGT
GAAATGTGTGGCCTGCCACAAGGAGTCCGCCACGTACGAGAGTTTTTCTA
ATCTCAGCCTGGAGCTGCCGCCAAACTCGAATGTATGTCAGCTGAACCAG
TGCATGGACATGTACTTCAGTGGAGAAAGGATCCATGGCTGGAATTGTCC
TAGTTGTAAAACGAAAAGAGATGCCATCAAGAAGCTGGATATATCGAAGC
TGCCACCTGTGCTGGTGGTGCATCTTAAGCGCTTCTATGCGGATCCCAGT
AACTCTGGCTCGTACATGAAGAAGCAGACTACTTGCGCTTCCCGCTCGAG
AACTTGGACATGAATCCCTACATAGCACGGGCGGAATCGCGGGCGGTAAC
ACCTAGACCTACCAGCTGTACGCCGTATCCAATCACTACGGCACCATGGA
AAGGCGGCACTACACGGCATTTTGCAGACGCCCAACTACGGAAATGGTTC
AAGTTCGACGAATCAGGTCGTCTCCGCGTTGGACTCCTCCTAACGT
FMO12009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubpy-RB | 1546 | CG5798-RB | 79..1118 | 9..1046 | 4955 | 98.9 | Plus |
| Ubpy-RA | 3204 | CG5798-RA | 1824..2776 | 96..1046 | 4520 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21137008..21137463 | 326..781 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 21136715..21136945 | 96..326 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 21137519..21137780 | 781..1039 | 960 | 95.4 | Plus |
| 3R | 32079331 | 3R | 21136560..21136647 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:19 has no hits.
FMO12009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:14 Download gff for
FMO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 73..1118 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:40 Download gff for
FMO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 73..1118 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:32 Download gff for
FMO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubpy-RB | 73..1118 | 1..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:32 Download gff for
FMO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21137520..21137786 | 782..1046 | 95 | | Plus |
| 3R | 21136554..21136646 | 1..95 | 96 | -> | Plus |
| 3R | 21136715..21136945 | 96..326 | 100 | -> | Plus |
| 3R | 21137009..21137463 | 327..781 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:40 Download gff for
FMO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16962276..16962368 | 1..95 | 96 | -> | Plus |
| arm_3R | 16962437..16962667 | 96..326 | 100 | -> | Plus |
| arm_3R | 16962731..16963185 | 327..781 | 100 | -> | Plus |
| arm_3R | 16963242..16963508 | 782..1046 | 95 | | Plus |
