FMO12012.5prime Sequence
1133 bp (977 high quality bases) assembled on 2012-06-25
> FMO12012.5prime
CAGTCGACATGGATGCCGAGGCGCCAAATCAACTAGAGAAAAATCAGACA
GCGACAGTTCCGAGACAGGAAACTGCGGAGGGAGGATCGACAGGTGAAAC
GGCAGTTGGAGGTGCAGCAGCCAAGGTCACGAAGGAACAGGATCACGATG
CGGAGTATCATCCGCCTACAAGCTATCTGGAGACCATCGTGCACCTATTC
AAGGGCAACATTGGGCCTGGTCTGTTCGCCATGGGAGATGCCTTCAAGAA
CGGAGGTCTCCTGGTGGCGCCACTTCTGACTGTTGTCATAGCAGTGGTGT
CCATCCACTGCCAACATGTCCTAGTGACCTGCTCCAAGAAGATGCGCGAT
CTTAAGGGCGATAGCGTATGTGCGGACTATGCCCAGACAGTGGAACAGTG
CTTCGAGAATGGTCCATCAAAGCTGAGGGGCTGGTCCCGAACGATGGGGC
GACTGGTGGACATATTCATTTGTGTGACCCAGTTGGGCTTCTGTTGCATT
TACTTTGTATTCATTAGCACGAATCTGAAGCAGATCCTGCAAGCCTACGA
TATCGACATGAACGTTCATCTAGTGATGCTGCTGGCCTTCGTACCCGTTC
TCCTCAGTTCACTAATCACGAACCTTAAGTGGCTGACTCCTGTCTCTATG
TTCGCCAATGTTTGCATGATCCTGGGACTGGCCATAACGTTGTACTATGC
CCTCAAGGACGGACTGCCGGAGGTTGAGGAACGCGCCCTCTGGACGAATG
GCTCCAGCTGGCTCTCTCTTCGGCACCGCATCTTGCCTCGAAGGATTGCT
TAGTGATGCCGTTGAGACGCCATGCGAAGCACACAGTTCGAGCGACCTTG
GGTGTGCTCATGTGGGCATGTTCTCGTCTCGTCATGTTCATGTTCGCCGG
ATCAGTGGGCTATATGAATTGGGCACAGCAGATACTACGTACTATGCAGG
CATAGGCCTGACTCGTACTGTTCCGCTCATATGCATGACATGCGCAGACG
TGAACGTCGATCGCGACTGCCGAGTCGCTGACTTCTAGCATGCAGTGCGT
CATGTTCAGACAAAGCCGTCGATTCTAGTCTGTCGCAACAATGATCGAGG
CCTCACTGGCTGTATAATATACATGGATGTCAA
FMO12012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16700-RA | 2433 | CG16700-RA | 265..1197 | 7..923 | 4250 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17096281..17096645 | 169..533 | 1825 | 100 | Plus |
| X | 23542271 | X | 17096715..17097122 | 532..923 | 1275 | 94.4 | Plus |
| X | 23542271 | X | 17095411..17095568 | 19..176 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:34 has no hits.
FMO12012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:01 Download gff for
FMO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1205 | 1..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:15 Download gff for
FMO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1205 | 1..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:04 Download gff for
FMO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16700-RA | 260..1205 | 1..931 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:04 Download gff for
FMO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17095413..17095564 | 21..172 | 100 | -> | Plus |
| X | 17096285..17096645 | 173..533 | 100 | -> | Plus |
| X | 17096717..17097130 | 534..931 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:15 Download gff for
FMO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16989446..16989597 | 21..172 | 100 | -> | Plus |
| arm_X | 16990318..16990678 | 173..533 | 100 | -> | Plus |
| arm_X | 16990750..16991163 | 534..931 | 95 | | Plus |
