FMO12013.5prime Sequence
1122 bp (976 high quality bases) assembled on 2012-06-25
> FMO12013.5prime
CAGTCGACATGTCACAGCATTCGAAAAAGGAAACCACCAGCAGCAGCGGT
AGCCATGCGGCCCAGAGCAATCGTCACAACAACATCGGCGGCGGCGGCGG
AAACGGCAATAGCAACAGCATCAGCGGTAGCAGCAACAACAAGAGCCACA
AGCGGCAGGCGGCCAATGGCAGTCTAAAGTCGCCACTCCTGACAATCACC
AACATCAACTCCCACAGCCAAAAAGGCGCTTTGAAATCGCCCGTCAGCAA
AGTCAAGCAGAGCAGCAACAGCAGCAGTAGCAACAGTAACAGCAAAACCC
TCAGCGGGAGCAGCATGCAGGAGACCGGCTCATCCGCCACATCCTTGCTG
GCCGCTGGCGGCAAGGCGAAGAAGAACTAAAAAGACAAGCAGCGCGAGCG
GGAACGCTTGGAACGCGGCCAGCTGGTCCTCTGGCGTCGTCCCCTGCAGA
CCACCAAGTACTGCGGCCTCGAGCTGTTCACCTTGCTGCGCACGTGGAGC
ACCAGATTGCTGCAACAGCGTCTCCTGTTGGCCACTCTGATAGTATTAAG
CATCGTATTTAGCGTAATTTACAAGATAGACGGTCCCCATCAGTTGGCCA
TCGAGTTTGTGCGCCGGAACACCTGGTTCTTTGTCTACTGGTTGGGTCTG
GGCGTGCTCTCCTCGGTGGGCTTGGGCACCGGACTGCACACGTTTCTGCT
CTATCTGGGGCCGCACATAGCCAGTGTCACGCTGGCCGCCTACGAGTGCA
ATTCCCTGCGATTCCCACAGCCACCGTATCCCGATGATATTATCTGTCCC
GAGGAGCCGTACGACAACATGTGCCAAATATCTGGTCCATTATGTCCAAG
GTGCGCCTGGAAGGCCTTCCTCTGGGAGCGGCACAGCGCTGGGCGAACTG
CCACCGTACTTTATGGCCAAGGCGGCTAGGCTGTCCGGCTACGATCCGGA
AGACGCCGAGGAGCTGGCCAAGTTCGAGGCCCTCAACGCGAAGCGTCACC
AAAAGAACCTCAGTATGATGGACAGGGGCAAGCTATCATGGAAGCGCGTT
GTGGAAGCGCGTCGATTCTTGCATCTTGCCTGGTGCAAGCATTCCATTCC
CCTATCGAACTGCGGATCACTG
FMO12013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango5-RE | 3141 | CG32675-RE | 1111..2212 | 9..1105 | 5140 | 98.4 | Plus |
| Tango5-RF | 2298 | CG32675-RF | 268..1369 | 9..1105 | 5140 | 98.4 | Plus |
| Tango5-RD | 2207 | CG32675-RD | 177..1278 | 9..1105 | 5140 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10761915..10762411 | 505..9 | 2470 | 99.8 | Minus |
| X | 23542271 | X | 10761578..10761862 | 787..503 | 1425 | 100 | Minus |
| X | 23542271 | X | 10761240..10761509 | 1055..788 | 1050 | 95.9 | Minus |
| 3L | 28110227 | 3L | 11732518..11732633 | 633..748 | 310 | 84.5 | Plus |
Blast to na_te.dros performed 2014-11-28 03:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2563 | 61..305 | 280 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 107..341 | 260 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2838 | 66..314 | 244 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6950 | 107..343 | 238 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6950 | 76..299 | 238 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2687 | 14..307 | 234 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2644 | 14..322 | 233 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2441 | 33..158 | 231 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6922 | 77..286 | 230 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..3003 | 89..320 | 228 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6913 | 14..158 | 214 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7006 | 31..295 | 209 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7086 | 33..294 | 164 | 57.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1144 | 77..158 | 155 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1153 | 66..142 | 151 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2683 | 31..276 | 147 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1599 | 72..171 | 145 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1475..1567 | 62..157 | 121 | 61.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8634..8665 | 112..143 | 115 | 84.4 | Plus |
FMO12013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:39 Download gff for
FMO12013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RD | 176..1289 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:05 Download gff for
FMO12013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RC | 285..1398 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:05 Download gff for
FMO12013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango5-RD | 177..1290 | 9..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:05 Download gff for
FMO12013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10761578..10761859 | 506..787 | 100 | <- | Minus |
| X | 10761215..10761509 | 788..1078 | 95 | <- | Minus |
| X | 10761915..10762411 | 9..505 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:05 Download gff for
FMO12013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10655248..10655542 | 788..1078 | 95 | <- | Minus |
| arm_X | 10655611..10655892 | 506..787 | 100 | <- | Minus |
| arm_X | 10655948..10656444 | 9..505 | 99 | | Minus |
