FMO12014.5prime Sequence
876 bp (775 high quality bases) assembled on 2012-06-25
> FMO12014.5prime
CAGTCGACATGGACGCCATCAAGAAGAAGATGCATGCGATGAAGCTTGAG
AAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAGCCAAGGA
TGCCAACTCCCGCGCCGACAAACTGAACGAGGAGGTGCGCGATCTGGAGA
AGAAGTTCGTCCAGGTGGAGATCGATCTGGTTACCGCCAAGGAGCATCTG
GAGAAGGCCAACACCGAGCTGGAGGAGAAGGAGAAACTCCTGACCGCCAC
CGAGTCCGAGGTGGCCACCCAGAACCGCAAGGTGCAACAGATTGAGGAGG
ATCTGGAGAAGTCCGAGGAGCGCTCGACCACCGCCCAACAGAAGCTGCTG
GAGGCCACCCAGTCGGCCGATGAGAACTTCCGCATGTGCAAGGTGCTGGA
GAACCGTTCCCAGCAGGATGAGGAGCGCATGGACCAGCTGACCAACCAGT
TGAAGGAGGCCCGCATGCTGGCTGAGGATGCCGATACCAAGTCCGACGAG
GTCTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAGGTGGCTGAGGA
TCGTGTCCGCTCCGGCGAGTCCAAGATCATGGAGCTGGAGGAGGAGCTGA
AGGTTGTCGGCAACTCCCTGAAGTCCCTGGAGGTGTCCGAGGAGAATGCC
AACCAGCGCGTGGAGGAGTTCAAGCGCGAGATGAAGACCCTGTCCATCAA
GTTGAAGGAGGCCGAGCATCGCGCCGAGCACGCCGAGAAGCAAGTGAAGC
GCCTGCAGAAGGAGGTCGACAGGCTAGAGGACCGTCTCTTCATGAGAAGG
AAAATACAAAGCAATCTGCGACGATTTGGACCAGACATTTGCCGAACTTA
CTGGATATGCAAGCTTTCTAGACCAT
FMO12014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-RC | 1980 | CG4843-RC | 108..960 | 8..858 | 4125 | 99.1 | Plus |
| Tm2-RG | 1145 | CG4843-RG | 77..851 | 8..782 | 3785 | 99.2 | Plus |
| Tm2-RF | 1200 | CG4843-RF | 132..906 | 8..782 | 3785 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15312452..15313048 | 8..604 | 2925 | 99.3 | Plus |
| 3R | 32079331 | 3R | 15313107..15313286 | 601..780 | 870 | 98.9 | Plus |
| 3R | 32079331 | 3R | 15313590..15313670 | 780..858 | 305 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:22:41 has no hits.
FMO12014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:02 Download gff for
FMO12014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 80..942 | 1..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:19 Download gff for
FMO12014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 101..963 | 1..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:08 Download gff for
FMO12014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RC | 101..963 | 1..862 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:08 Download gff for
FMO12014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15312445..15313046 | 1..602 | 98 | -> | Plus |
| 3R | 15313109..15313286 | 603..780 | 98 | -> | Plus |
| 3R | 15313591..15313673 | 781..862 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:19 Download gff for
FMO12014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11138167..11138768 | 1..602 | 98 | -> | Plus |
| arm_3R | 11138831..11139008 | 603..780 | 98 | -> | Plus |
| arm_3R | 11139313..11139395 | 781..862 | 95 | | Plus |
