FMO12015.5prime Sequence
836 bp (836 high quality bases) assembled on 2012-06-25
> FMO12015.5prime
CAGTCGACATGCAGATGCGCGTCACGGAATTGCCAGCAGTTCAGCTGCTG
CTGCCCCTAATCCTGATTGGATTGGCCAGCGGACAGCGCGTCGCTCCCGG
AGTGAATCCGCAGCACTATCAACAAGTGCCGCAGCAGGTGCCGCAGCACC
ACCCACCGCCACCACCGCAGCACCACCAGCCGCAGTACCAGCAACAGGTC
CACTCAGCACCCGGTGTGCCGCCCCAGCAATACCAATACGAACAGGTTCA
AGTTCCCGTGCAACAGCAGGCACCGGTCCAATATCAGCAAGTTCCTGTGC
AGCAGCAGCAGCAGCAACATCAACCAATCCACCAGCAACCGACGATGCAG
CAACAGCAACAGCCGCAGCAGGGGCACCACCAGCAGGCAGGTGGCCACCA
CCATGGGCAACCGCAGCAAGTCCTAAACACCGGCAACATTCAGCAGGAGC
GCGCTCACATCCAGGAGCACATGCAAGTGCCAATCGATACAAGCAAGATG
TCCGAGGCTGAGCTGCAGTTCCACTACTTCAAGATGCACGACTCGGACAA
CAACAACAAGTTGGACGGCTGCGAGCTGATCAAATCGCTGATCCATTGGC
ACGTCAAGGATAGTGGAGAAAAACCAGCCGAGGCACACCAGGAAGGCCAC
GCCGAGGGCCAAGCGCAGCAGCCCGATGATCACAAATCCGGATCTGTGTA
CACGGACAAGGCTCTGGAGGACACCATTGACTATGTGCTGAAGTCCATGG
ACCTGAACAACGATGGATTTGTCGACTGGGCCGAGTACCGCAAGACTGAG
GCCAACATTGGCAAGGACGCAAGCTTTCTAGACCAT
FMO12015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17271-RB | 1098 | CG17271-RB | 137..947 | 8..818 | 4040 | 99.9 | Plus |
| CG17271-RA | 1550 | CG17271-RA | 137..732 | 8..603 | 2965 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20821146..20821366 | 454..234 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 20819280..20819495 | 818..603 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 20820650..20820798 | 603..455 | 730 | 99.3 | Minus |
| 3R | 32079331 | 3R | 20821428..20821541 | 233..120 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20821601..20821712 | 119..8 | 560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3371 | 246..338 | 139 | 63.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..728 | 446..348 | 111 | 61 | Minus |
| BS | 5142 | BS BS 5142bp | 2047..2118 | 218..289 | 108 | 61.1 | Plus |
FMO12015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:17 Download gff for
FMO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 145..961 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:43 Download gff for
FMO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 131..947 | 1..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:35 Download gff for
FMO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17271-RB | 131..947 | 1..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:35 Download gff for
FMO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20821601..20821716 | 1..119 | 96 | | Minus |
| 3R | 20819280..20819494 | 604..818 | 100 | <- | Minus |
| 3R | 20820650..20820798 | 455..603 | 99 | <- | Minus |
| 3R | 20821146..20821366 | 234..454 | 100 | <- | Minus |
| 3R | 20821428..20821541 | 120..233 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:43 Download gff for
FMO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16647323..16647438 | 1..119 | 96 | | Minus |
| arm_3R | 16645002..16645216 | 604..818 | 100 | <- | Minus |
| arm_3R | 16646372..16646520 | 455..603 | 99 | <- | Minus |
| arm_3R | 16646868..16647088 | 234..454 | 100 | <- | Minus |
| arm_3R | 16647150..16647263 | 120..233 | 100 | <- | Minus |
