FMO12016.5prime Sequence
960 bp (959 high quality bases) assembled on 2012-06-25
> FMO12016.5prime
CAGTCGACATGTTGGACAATAATTCTTGTGCGCAAACCAATATTTTAACC
AGTAAAGAAATGGCGAATAACAGCCCGACCCGCGGCTCTGTCATGCTGCT
GACGCTGGTTTTGCTGCTACTGAGTAGAAAAATCGGTTTGGTAGATGGGC
ACAAAGTTACGGCTACGTCAATTTCCAATCACAATTACCCGGTAGAAGAG
CATACAGTCATCACCCATGATGACTACATCCTTACTATTTACCGCATCCC
ATCATCCCCAAACCGAAGTCATCTAAATAGAGCTGGGCGAAGGGCTGTAG
TGTTTTTGCAACATGGCATCCTGAGTGCTTCCGACGACTGGATTATAAAC
GGACCAGAGGCGTCTCTGGCCTACATGCTTGCAGACGCCGGCTACGATGT
CTGGCTGGGCAATGCACGTGGCAACACGTACTCACGGCAGCACAAGCATA
TCCATCCGGACACGTCCGACTTTTGGCGTTTCAGCTGGCACGAGATAGGT
GTCTATGACCTCGCAGCCATGCTAGACTATGCGCTGGCGAAGAGTCAGTC
CAGCTCTTTGCATTTTGTTGCACACTCGCAGGGTACCACGGCGTTCTTTG
TACTTATGTCTTCTCTGCCTTTGTACAACGAAAAGTTGCGTTCCGTGCAC
CTATTGGCGCCCATAGCTTACATGCGTGACCACTCTTTTATTCTGTCCAA
GCTGGGTGGCATTTTTCTGGGAACGCCGTCCTTTCTTAGCTGGGTATTAG
GAAGTATGGAGCTGCTACCTATTACTAATTTACAGAACTGATATGTGAGC
ACATCTGTTCCAGTAGCTCCATGTTAACTTTCTGTGCTCTGGTCTGCTGG
ACTTCATCGGAGGGTGGGGAACACGACACTTGAACCAGGTCAGGCGACTT
CCGACAGTAGCAAGCTTTCTAGACCATTCGTTGGCGCGCCGGCCCAGGTA
AGTGGTCATA
FMO12016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3635-RC | 1301 | CG3635-RC | 36..938 | 9..909 | 4465 | 99.8 | Plus |
CG3635-RB | 1381 | CG3635-RB | 36..917 | 9..888 | 4360 | 99.8 | Plus |
Lip3-RA | 1434 | CG8823-RA | 387..518 | 315..446 | 225 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22182737..22183468 | 161..890 | 3560 | 99.7 | Plus |
2L | 23513712 | 2L | 22175450..22175603 | 9..162 | 770 | 100 | Plus |
3R | 32079331 | 3R | 13371246..13371364 | 433..315 | 220 | 79 | Minus |
3L | 28110227 | 3L | 20460998..20461069 | 366..437 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:30 has no hits.
FMO12016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:18 Download gff for
FMO12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 28..938 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:45 Download gff for
FMO12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 28..938 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:37 Download gff for
FMO12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3635-RC | 28..938 | 1..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:37 Download gff for
FMO12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22175442..22175602 | 1..161 | 97 | -> | Plus |
2L | 22182738..22183466 | 162..888 | 99 | -> | Plus |
2L | 22183608..22183625 | 889..906 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:45 Download gff for
FMO12016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22175442..22175602 | 1..161 | 97 | -> | Plus |
arm_2L | 22182738..22183466 | 162..888 | 99 | -> | Plus |
arm_2L | 22183608..22183625 | 889..906 | 100 | -> | Plus |