Clone FMO12016 Report

Search the DGRC for FMO12016

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3635-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12016.5prime Sequence

960 bp (959 high quality bases) assembled on 2012-06-25

> FMO12016.5prime
CAGTCGACATGTTGGACAATAATTCTTGTGCGCAAACCAATATTTTAACC
AGTAAAGAAATGGCGAATAACAGCCCGACCCGCGGCTCTGTCATGCTGCT
GACGCTGGTTTTGCTGCTACTGAGTAGAAAAATCGGTTTGGTAGATGGGC
ACAAAGTTACGGCTACGTCAATTTCCAATCACAATTACCCGGTAGAAGAG
CATACAGTCATCACCCATGATGACTACATCCTTACTATTTACCGCATCCC
ATCATCCCCAAACCGAAGTCATCTAAATAGAGCTGGGCGAAGGGCTGTAG
TGTTTTTGCAACATGGCATCCTGAGTGCTTCCGACGACTGGATTATAAAC
GGACCAGAGGCGTCTCTGGCCTACATGCTTGCAGACGCCGGCTACGATGT
CTGGCTGGGCAATGCACGTGGCAACACGTACTCACGGCAGCACAAGCATA
TCCATCCGGACACGTCCGACTTTTGGCGTTTCAGCTGGCACGAGATAGGT
GTCTATGACCTCGCAGCCATGCTAGACTATGCGCTGGCGAAGAGTCAGTC
CAGCTCTTTGCATTTTGTTGCACACTCGCAGGGTACCACGGCGTTCTTTG
TACTTATGTCTTCTCTGCCTTTGTACAACGAAAAGTTGCGTTCCGTGCAC
CTATTGGCGCCCATAGCTTACATGCGTGACCACTCTTTTATTCTGTCCAA
GCTGGGTGGCATTTTTCTGGGAACGCCGTCCTTTCTTAGCTGGGTATTAG
GAAGTATGGAGCTGCTACCTATTACTAATTTACAGAACTGATATGTGAGC
ACATCTGTTCCAGTAGCTCCATGTTAACTTTCTGTGCTCTGGTCTGCTGG
ACTTCATCGGAGGGTGGGGAACACGACACTTGAACCAGGTCAGGCGACTT
CCGACAGTAGCAAGCTTTCTAGACCATTCGTTGGCGCGCCGGCCCAGGTA
AGTGGTCATA

FMO12016.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3635-RC 1301 CG3635-RC 36..938 9..909 4465 99.8 Plus
CG3635-RB 1381 CG3635-RB 36..917 9..888 4360 99.8 Plus
Lip3-RA 1434 CG8823-RA 387..518 315..446 225 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22182737..22183468 161..890 3560 99.7 Plus
2L 23513712 2L 22175450..22175603 9..162 770 100 Plus
3R 32079331 3R 13371246..13371364 433..315 220 79 Minus
3L 28110227 3L 20460998..20461069 366..437 195 84.7 Plus
Blast to na_te.dros performed on 2014-11-28 03:13:30 has no hits.

FMO12016.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:18 Download gff for FMO12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3635-RC 28..938 1..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:45 Download gff for FMO12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3635-RC 28..938 1..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:37 Download gff for FMO12016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3635-RC 28..938 1..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:37 Download gff for FMO12016.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22175442..22175602 1..161 97 -> Plus
2L 22182738..22183466 162..888 99 -> Plus
2L 22183608..22183625 889..906 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:45 Download gff for FMO12016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22175442..22175602 1..161 97 -> Plus
arm_2L 22182738..22183466 162..888 99 -> Plus
arm_2L 22183608..22183625 889..906 100 -> Plus