Clone FMO12019 Report

Search the DGRC for FMO12019

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:19
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13516-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12019.5prime Sequence

530 bp (530 high quality bases) assembled on 2012-06-25

> FMO12019.5prime
CAGTCGACATGGATCAGAAGCGAGCCATGCTTTATCCGCAAGTGGATTTC
AACGCCCCGACGGCCCCCTCGCCGACGCCAACGAGGGAGTTGGGCAATCC
CATCGCCAACGGCCTGCCCATCGAGGCTCCTCCGTCGTACGATGTGGCGG
TGTCTGTTCCGGTGGCTCCAGCGGTTTCCGCACCAGCAATCGCCCCAGCA
CGACCACCGCCAGTGGTTGTCGTGGAGCAACCAGCCCCACAACCACCCAC
AGTGGTTCCAACAGATACTCTACACTTGGGTCCAAATCGAAGTAGGGTTC
TCTGCCCAGCCTGTGGAGCCAACAAAACTACGAGGATGACACACACGGCT
AACTCCAGGACCCATATGGTGGCAGGTCTTCTCTGTTTGGTCGGATTCTG
CTGCTGTGCCTGTTTTGTTCCCTATTGCATGAACAGTTGCCGTACTGGAA
ACCACTATTGTCGCAAGTGTAACACCTTCCTGGGAGCCTACAATCCAAAG
GGGATGAACCGAGCAAGCTTTCTAGACCAT

FMO12019.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13516-RB 1319 CG13516-RB 455..959 8..512 2480 99.4 Plus
CG13516-RA 1032 CG13516-RA 168..672 8..512 2480 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22669599..22669855 8..264 1270 99.6 Plus
2R 25286936 2R 22669921..22670053 262..394 650 99.2 Plus
2R 25286936 2R 22670144..22670262 394..512 580 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 03:13:37 has no hits.

FMO12019.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:19 Download gff for FMO12019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 137..648 1..512 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:50 Download gff for FMO12019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 161..672 1..512 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:39 Download gff for FMO12019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13516-RA 161..672 1..512 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:39 Download gff for FMO12019.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22669592..22669855 1..264 98 -> Plus
2R 22669924..22670053 265..394 99 -> Plus
2R 22670145..22670262 395..512 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:50 Download gff for FMO12019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18557097..18557360 1..264 98 -> Plus
arm_2R 18557429..18557558 265..394 99 -> Plus
arm_2R 18557650..18557767 395..512 99   Plus