FMO12020.5prime Sequence
1140 bp (898 high quality bases) assembled on 2012-06-25
> FMO12020.5prime
CAGTCGACATGCAGCAGTCGGGTCAAAAAGGCACCAGAAACACGCTTCAG
CACGCCATCGGCCCAGTTCTGGTTATAGCCCAGTTCTTCGGAGTCCTGCC
TGTTGCAGGAGTCTGGCCGAGTTGTCGTCCGGAGAGGGTGCGCTTTCGCT
GGATATCCTTGTCCCTGCTGGCTGCTCTGATCCTGTTCGTCTTCTCCATC
GTGGACTGTGCGCTATCCTCGAAAGTGGTGTTCGATCATGGACTGAAAAT
CTATACCATAGGATCTCTTAGTTTCAGCGTGATCTGCATCTTTTGTTTTG
GGGTCTTCCTGCTGCTTTCCCGCCGCTGGCCATACATCATCCGTCGAACG
GCGGAGTGCGAGCAGATATTCCTGGAACCAGAGTACGATTGCAGCTATGG
ACGTGGCTACTCCAGTCGCCTTCGCCTCTGGGGAGTCTGCATGCTGGTGG
CCGCTCTCTGCGAGCACTCCACCTATGTGGGCAGCGCGCTGTACAACAAT
CACCTGGCCATCGTGGAGTGCAAGCTGGATGCGAACTTTTGGCAGAACTA
TTTTCAGCGAGAGCGCCAGCAGCTCTTCCTGATCATGCACTTCACCGCCT
GGTGGATACCCTTCATCGAGTGGACCACGCTGTCGATGACCTTCGTGTGG
AACTTTTGTGGACATCTTTCTGATACTCATCTGCCGCGGATTGCAGATGC
GATTCCAGCAGATGCACTGGCGCATCAGGCAGCATGTGAGGCAGCAAATG
CCGAATGAATTCTGGCAGAGGATTCGCTGTGATCTTCCTGGACCTCAGTG
ATCTTCTGGGTATCTACGACAAGGAATTATCCGGTTTGATCGTGCTATCC
TGTGCCACAATATGTTCTTCGTTTGTGTGCAGATTTATCATAAGCTTTCA
TTCCAAGGGCAACTATGCGGAAGGAGTTATAATTTCTGGTTTTGCTTGTC
TGAAGTCATCATTCGCGTACTAAACATGATGTTCGACTGCATCCTCGATT
CCGCAAGAAGCTTACGGAAATTTCCCAACACCCTCATATACGAAATACCC
CATGAGTTTTGGTGCTGGAGCCTCAGCCGCCTGAATGAAAACTCTTTTCT
ATCCCAACACTTTGCTCTGAATGGCAAGGAATACTTTCGG
FMO12020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64b-RA | 2858 | CG32257-RA | 1491..2608 | 8..1138 | 5000 | 96.9 | Plus |
Gr64c-RB | 2858 | CG32256-RB | 1491..2608 | 8..1138 | 5000 | 96.9 | Plus |
Gr64c-RA | 1542 | CG32256-RA | 175..1292 | 8..1138 | 5000 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4030798..4031429 | 260..892 | 2990 | 99.2 | Plus |
3L | 28110227 | 3L | 4030543..4030741 | 64..262 | 995 | 100 | Plus |
3L | 28110227 | 3L | 4031496..4031721 | 902..1138 | 460 | 86.5 | Plus |
3L | 28110227 | 3L | 4030438..4030496 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:20:34 has no hits.
FMO12020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:39 Download gff for
FMO12020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64c-RA | 166..1294 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:07 Download gff for
FMO12020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64c-RA | 166..1294 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:07 Download gff for
FMO12020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64c-RA | 166..1294 | 1..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:07 Download gff for
FMO12020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4030429..4030496 | 1..66 | 95 | -> | Plus |
3L | 4030546..4030740 | 67..261 | 100 | -> | Plus |
3L | 4030800..4031436 | 262..900 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:07 Download gff for
FMO12020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4030429..4030496 | 1..66 | 95 | -> | Plus |
arm_3L | 4030546..4030740 | 67..261 | 100 | -> | Plus |
arm_3L | 4030800..4031436 | 262..900 | 99 | -> | Plus |