Clone FMO12021 Report

Search the DGRC for FMO12021

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:21
Vector:pMK33-CFH-BD
Associated Gene/Transcriptlox2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12021.5prime Sequence

1182 bp (1013 high quality bases) assembled on 2012-06-25

> FMO12021.5prime
CAGTCGACATGTGCGCAATCGAAGATCGAAAGGTCCTCAAGATGGGGCTC
ACTCTTGTGTGCCTGACTTTACTGGCCATTCACATGGCAGATGCGGTTGT
GCAGCACAGATCCTTGGAGGATGCTCGACAGGAGCGCCAGCGATTGGTGC
ACAGGTACACAAAGGTCCTGAACAAGGAGGAGGGAGCCATAAGACTGGTG
GGCGGAGATAATGAGTACGAAGGCAACATTGAGGTCCTGCACAATGGCAA
GTGGGGAGCAGTTTGCGATGACGAGTGGGATTCCACCGAAGCAGACATTG
TGTGCCGACAACTGGGTTTTCCCGGCATGCGGAGGTATACGAGAAGTGGC
TTCTTTGGACCCGCTCGTCGTCGCTTCTGGATGGACAACCTCTTTTGCGA
GGGTCACGAGCAGGAACTAGTGGATTGCCATTTCGAGGGCTGGGGCGAGA
ACGATTGTGAACCAGGAGAGGCGGCTGGCGTGGTCTGTTACCCGCCGGAA
AATGCACTGATCCCCATGGCAACACCCATCATCCGCGACGAGGATTTGCC
CAAGTACCCGATTCATTCGCGATCACGTTTATACGTGAGACTGCGAGGCG
GAAGATCGCGGATCGAGGGACGAGTGGAGGTCAGTTTGGATGGCGGTCGA
TGGGGCAGTGTGTGCGCCGATGGCTGGTCACTTTTGGAGGCCAATGTCGT
GTGCCGACAGCTCGGCCTGGGCTATGCCAGCGAGGCCTTCCAAACCGATT
TCTTTGGTGGCTTCAATGTGTCAAGACCCGTGCTGAGTGGCAGCGAATGC
TATGGCAACGAAAACGGAACTGGCTGACTGCCTGCATCATGATGCAAGTC
AGGTATCATCAGCTGTCATGGCAATCGGCAGCACGTGGCCCGCTGTGATC
TGTGACTATTATCGCCCCCCGATCTTGGTGGTTGGATATCTGGAAATCGA
AACAGACGGCCCCATTCTGAAGGATAAGACCCATGCTTGCTGATGCCAGT
GCGCCATGGAGAAAATCGGTGTTGGCCCAACGAGGCCGTATCAAATCCAA
CGGGAATGATTCCCCCACTTGGCGGTTTATCAGATCTAGGGCGGTTTGCC
TCAAGTTTCCGGGCAGCTCGCCCTTCAATGGCGGGGGCATGGCTGGAAAT
TTCCGGTAATTCCAGGGAGAAAAAGCCAATTG

FMO12021.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
lox2-RA 1729 CG4402-RA 30..1115 9..1118 4790 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21790418..21791239 1055..221 3365 97.1 Minus
2R 25286936 2R 21791337..21791551 223..9 1075 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:20:38 has no hits.

FMO12021.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:40 Download gff for FMO12021.5prime
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 98..1204 1..1135 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:10 Download gff for FMO12021.5prime
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 23..1129 1..1135 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:09 Download gff for FMO12021.5prime
Subject Subject Range Query Range Percent Splice Strand
lox2-RA 23..1129 1..1135 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:09 Download gff for FMO12021.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21790348..21791237 223..1140 95 <- Minus
2R 21791338..21791558 1..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:10 Download gff for FMO12021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17677853..17678742 223..1140 95 <- Minus
arm_2R 17678843..17679063 1..222 98   Minus