FMO12022.5prime Sequence
1069 bp (622 high quality bases) assembled on 2012-06-25
> FMO12022.5prime
CAGTCGACATGATCCACTGGTCTCTGATTGTCATTGCCCTGGGCGTCTGC
GTGGCCGTCTTGGGCGGCTACTGCGGCTGGATTCTCTTCCCCAACATGGT
ACACAAAAAGGTCGAGCAGAGCGTTGTTATACAAGATGGCTCGGAACAAT
TCAAACGATTTGTGAATTTACCTCAGCCATTGAACTTCAAAGTCTACATA
TTCAATGTGACCAATTCGGATAGGATTCAACAAGGTGCCATACCAATAGT
CGAGGAAATAGGACCCTATGTATACAAACAATTCCGCCAGAAGAAAGTGA
AGCACTTTTCAAGAGATGGATCGAAAATTTCCTATGTGCAAAATGTGCAT
TTCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAATATGATCGAAT
TGTGGCTCTCAATATGCACATGAATTCTGTGCTGCAGATCTCTGAGAATG
ATCCTGGACTGGCTTTATTGCTAGTCCACTTGAATGCGAATCTGAATGCT
GTCTTCAACGATCCAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATA
TCTTTTCGATGGAGTACGATTCTGTATCAATCCGCATGGAATCGCCAAGG
CAATTTGTAACCAGATCAAGGAAAATGGATCGAAAACAATCACGGAGAAG
AGCGATGGCAGCTTGGCATTCTCATTCTTCGGTCATAAAAATGGTTCTGG
TCACAAAGTATACGATGTGCATACTGAAAAAGGTGATCCTATGATGGTAT
TGGAGATTCAAAACTGGATGATTCGCACAACCTGCAGGTGTGGCTGAATG
CCAGTTAAAGGGCGAAACTTCGGTTTGTAATCAAATCATGGCACTGATGC
ATCCGCATATCCGCCATTTCGCCAACGAAGGGATTCGATGTCATTTTAGC
GAGATATTGCAGATCGGTGCAGCTAATTCAACAAATCGAATCGTACAGGT
ATACTGGAATAGATACCTCTATTGCCGAAGACTTTATCACGAACTTTGGT
CCGGAACATTGAATAACGAGTGGCTCTGGGGTGACCAAAATGGCGAATGT
GATCAAAAGAAATAACGAA
FMO12022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RB | 2343 | CG7422-RB | 608..1676 | 9..1067 | 4405 | 95.3 | Plus |
| Snmp2-RD | 2837 | CG7422-RD | 1519..2170 | 426..1067 | 2365 | 92.9 | Plus |
| Snmp2-RC | 2481 | CG7422-RC | 1163..1814 | 426..1067 | 2365 | 92.9 | Plus |
| Snmp2-RD | 2837 | CG7422-RD | 964..1380 | 9..425 | 2040 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7736609..7736869 | 686..426 | 1245 | 98.5 | Minus |
| 3L | 28110227 | 3L | 7738539..7738700 | 277..116 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 7736334..7736541 | 891..687 | 800 | 95.7 | Minus |
| 3L | 28110227 | 3L | 7738335..7738482 | 425..278 | 710 | 98.6 | Minus |
| 3L | 28110227 | 3L | 7741968..7742078 | 119..9 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:22:37 has no hits.
FMO12022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:46:02 Download gff for
FMO12022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7422-RB | 600..1528 | 1..922 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:18 Download gff for
FMO12022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RB | 600..1528 | 1..922 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:56:07 Download gff for
FMO12022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RB | 600..1528 | 1..922 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:56:07 Download gff for
FMO12022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7738539..7738696 | 120..277 | 100 | <- | Minus |
| 3L | 7741968..7742086 | 1..119 | 95 | | Minus |
| 3L | 7736609..7736869 | 426..686 | 98 | <- | Minus |
| 3L | 7736299..7736541 | 687..922 | 94 | <- | Minus |
| 3L | 7738335..7738482 | 278..425 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:18 Download gff for
FMO12022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7729399..7729641 | 687..922 | 94 | <- | Minus |
| arm_3L | 7729709..7729969 | 426..686 | 98 | <- | Minus |
| arm_3L | 7731435..7731582 | 278..425 | 98 | <- | Minus |
| arm_3L | 7731639..7731796 | 120..277 | 100 | <- | Minus |
| arm_3L | 7735068..7735186 | 1..119 | 95 | | Minus |
