FMO12023.5prime Sequence
1137 bp (1010 high quality bases) assembled on 2012-06-25
> FMO12023.5prime
CAGTCGACATGTACGCCTATAATAAGATGGGTCGGGTTCCAGAGCTTGTT
ATATGCTCCTTCATAGTGGTCACCCTGCTGGTCATACACTTCTTCTCTGA
TCTGCTGAGAGCCTCCCTAGGCGGCTACTACAACCAGGATGTTACACTTT
CCCAGCTGGTTGAGTCGCAGAACTCGGACTACGCATGGTTCCTTAAGCTG
CTGGTCAATTGCTTTGGTTATAGCTGCGTCTTTGTGCCGGGCTTCTTGAT
CTACAAATATGTCGGCAGGATTAACTACCTGGAAAGAGGCAACAAGACAT
TCCTGCACAAGGCTATCAATATGTGTATCACGGGTAACTCTGGATACGAT
CAGTTGGATGCAGGGACCAGCACCGCGGATAAGGATCGTCCGGCAGCCTC
TACGGCACCAAAGCGAACGAGTTCCCAGGAGGCCGTGCAACTATTATGGT
GCTTTGGCGGCCTGATGATCTCCTATCTTACCTGGGGTGTACTGCAGGAG
AAGATAATGACTCAAAACTATCTGAACTTCACTGGAGAAAGTGCCAAGTT
TAAGGACTCTCAGTTCCTGGTGTTTTCCAATCGTCTGCTGGCCTTTCTCG
TGGCGCTGGCCTATCTACAATGGCAGCCCTCACCTGTGCGACACCGTGCA
CCTCTGTACAAATACTCCTATGCCTCCTTCTCGAATATAATGAGCGCATG
GTTCCAGTACGAGGCCCTGAAGTTTGTCAACTTTCCCACCCAGGTGCTGG
CCAAATCGTGTAAGATTATACCCGTTATGCTGATGGGCAAAATCATGTCT
AACGCAAAGTACGAGAGTTACGAGTATGTGACGGCCCTGCTCATATCGCT
GGGCATGATCTTCTTCATGAGCGGCTCCTCGGACAGCAGCAAGGCCAGCG
GAGTGACCACGCTCACGGGCATTTTCCTGCTCTCCATGTACATGGTCTTC
GACAGCTTCACTGCCAATTGGCAAGGATCGCTCTTTAAGAGCTACGGCAT
GACCTCCGTTGCAGATGATGTTGCGGGCGTCAACTTGTTTTCCTTCCATT
TTCACCTGAGCCCTCGCTGTCCATTGCAGGAAGATTCCATGGAACTCTTG
ACATTTGTCTACCAAGCATCCTAAAGTTGTGGTTTGG
FMO12023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sll-RB | 1994 | CG7623-RB | 364..1481 | 7..1131 | 5150 | 97.8 | Plus |
| sll-RA | 1987 | CG7623-RA | 357..1474 | 7..1131 | 5150 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17606626..17607640 | 55..1074 | 4735 | 98.5 | Plus |
| 3R | 32079331 | 3R | 17606517..17606565 | 7..55 | 245 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 232..285 | 987..931 | 116 | 72.4 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9262..9315 | 987..931 | 116 | 72.4 | Minus |
FMO12023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:15 Download gff for
FMO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 357..1444 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:42 Download gff for
FMO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 353..1440 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:34 Download gff for
FMO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sll-RA | 353..1440 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:34 Download gff for
FMO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17606513..17606565 | 1..55 | 94 | -> | Plus |
| 3R | 17606627..17607661 | 56..1097 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:42 Download gff for
FMO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13432235..13432287 | 1..55 | 94 | -> | Plus |
| arm_3R | 13432349..13433383 | 56..1097 | 98 | | Plus |
