FMO12026.5prime Sequence
889 bp (889 high quality bases) assembled on 2012-06-25
> FMO12026.5prime
CAGTCGACATGTGTTGTTGGCAATCTCTTTGCTCCATAGCTTGGTTCGCC
GCGATGTCGGCAGCCCAGGAGACGCTTTCCGACACCCCGCAGAATAGCAC
ACCTTTGTTAGCCACAACTGTGTCGACCACGAAGGTGATAAGTTTCCGCC
CTCGTTATCCATACATCGTCTCCATAGGAGAGAACCTTAAAGGATACTAC
AAGCACCTTTGCGTGGGCGTTATACTTTCGAATGAGTTCGTGCTCAGTGC
AGCCCACTGCATCCAAACGAATCCAACCAAACAACTGTACGTGGCTGGTG
GCGCCGATTCGCTGAACAGCCGGAAGCAGACCCGCTTCTTCGTCGTGGAA
AGAAGATGGCATCCCCAGTTTAGGGTGCTCGGCGGCAACGACATTGCCGT
GTTGAGGATTTACCCCAAATTCCCGCTCGACGATGTGCGATTTCGTAGCA
TTAACTTTGCTGGAAAGCCTCAAAGGGATAGTGGCACCCAGGCCTCGCTG
GTTGGCTGGGGTCGGGTTGGCGTCGGCAAGATAAGAAAACTCCAGGAGAT
GCCCTTCTTGACCATGGAGAACGATGAGTGCCAGCAAAGCCATCGCTTCG
TTTTCCTCAAACCGCTTGACATCTGTGCGATGCATTTGAAAGGACCGCGA
GGTCCCTGCGACGGAGATTCTGGAGCTCCCTTGATGAATGTGGCAAAAAG
AGAAGCTGTACGGATTACTTTCCTACGGTCGAAAAGCCTGCACCCCATTA
AAACCCTATGCCTTCACTCGCATCAACGCATACTTCCAGCTGGATTCAGG
AATCCATGGACTCTATGGCTGCGAGATTAAAGTCTTACAAATTAATCGCA
CTGTAATGGAAAGATGGGTTAGCAAGCTTTCTAGACCAT
FMO12026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10041-RA | 952 | CG10041-RA | 17..877 | 9..871 | 4220 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12351409..12352063 | 663..9 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 12350890..12351096 | 871..663 | 850 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:55 has no hits.
FMO12026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:25 Download gff for
FMO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..887 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:00 Download gff for
FMO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..887 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:48 Download gff for
FMO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10041-RA | 12..887 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:48 Download gff for
FMO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12350879..12351096 | 663..880 | 96 | <- | Minus |
| 3R | 12351410..12352068 | 1..662 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:00 Download gff for
FMO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8176601..8176818 | 663..880 | 96 | <- | Minus |
| arm_3R | 8177132..8177790 | 1..662 | 99 | | Minus |
