FMO12027.5prime Sequence
1040 bp (978 high quality bases) assembled on 2012-06-25
> FMO12027.5prime
CAGTCGACATGAGATTAGATGGGGCTCTAGAGCCCCGGCCCCGTCAAGGA
GCTGCCACAATCAAGGGCCGCCAGCCCCTGAGGCGCGAAACACGCGAACC
ATGTGAGACGCAACAGCAGCAGCCAGCTGACGAAGACGACGAGGCCACAG
ACGCTGAGTGTTTGACCACCAACAGCAGCAGCAGCAGCAGCAGCACCAGC
AGCACCAGCAGCAACAATTGCCAAGCCAACTTGGTCTGCAATCCAAAGAG
AACAACATCAGCAACGCCCACGCCTATAAAAACAACCGGCGGCAGAGGCA
ATACCAGGCATACCATATTAATGGCGCCCAACGTGGGGCATCAGCGGAAG
AGCCTTGGCCTGCGACTTCCGATGAAGCAGGGCCGCAGCCGGCGGAGAAT
GATGGGTGCGGAATGGGGCTGGGAGCGCCTTAACGGCCTGCTCCTGTGCC
TGATTTCCGTTATTGCCCTGCTGCCGCCGCTGACGCTCGGCGATGACGGC
GATAATTTCTTTGCCGTGAATGCCTTTAGTGCGGGTCCGGAGACGACAAC
GCCAGAGTTCGATTATGCCAGTCGTGGGCAGAAGAAGTTCGGCGACAAGT
GCGATAATACCCTGGAATGCGGCTTCCCCGGCTCCATCTGCGATCCCAAG
AAGAAGTCCTGCCAGTGCACCGAGGATCTGCCCGTCACCAATCACTATGA
CAAATGTGGCAAAGAGGCCGCCGTGAACGAGTCCTGCTTCTTTAACGAGC
AGTGCGAGATGAGATACTTCCAGACGGAGTGCCGCGATGGACGCTGCATC
TGCCGGTTCGAGATGTCACCCATTTTGGGGCAAGGACGGATCCGTGGAGT
GCAAAGGGCGCCAGGACAAGAGGGGACCCGAGACCTACATCGACCCGGCC
ATGATTGGCGTGCTGGTAGGAATGACATTGATGTTTGTTATATTTGTGTC
GTCCTGCGATTGTTTAGCCAAGCTCGCTGGAGTGATAACCGAACCATCTT
TCAATACGTCCAATTCCTCGCCTGATGAACGTTCCTCCTT
FMO12027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14509-RE | 4716 | CG14509-RE | 268..1289 | 9..1032 | 4935 | 99 | Plus |
| CG14509-RD | 4231 | CG14509-RD | 269..1290 | 9..1032 | 4935 | 99 | Plus |
| CG14509-RC | 2372 | CG14509-RC | 268..1289 | 9..1032 | 4935 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29181159..29181711 | 561..9 | 2750 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29178667..29178820 | 714..561 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 29177599..29177742 | 857..713 | 675 | 99.3 | Minus |
| 3R | 32079331 | 3R | 29177389..29177505 | 970..855 | 520 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:20:42 has no hits.
FMO12027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:41 Download gff for
FMO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1295 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:12 Download gff for
FMO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1295 | 9..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:10 Download gff for
FMO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1295 | 9..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:10 Download gff for
FMO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29181159..29181711 | 9..561 | 99 | | Minus |
| 3R | 29177389..29177503 | 857..970 | 98 | <- | Minus |
| 3R | 29177600..29177740 | 715..856 | 99 | <- | Minus |
| 3R | 29178667..29178819 | 562..714 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:12 Download gff for
FMO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25003111..25003225 | 857..970 | 98 | <- | Minus |
| arm_3R | 25003322..25003462 | 715..856 | 99 | <- | Minus |
| arm_3R | 25004389..25004541 | 562..714 | 100 | <- | Minus |
| arm_3R | 25006881..25007433 | 9..561 | 99 | | Minus |
