FMO12028.5prime Sequence
1042 bp (1008 high quality bases) assembled on 2012-06-25
> FMO12028.5prime
CAGTCGACATGTCGACGGCCCTGGTTTATTGGCAGTCAATGAATGGCGGC
GATCCGGTTGACAAGGCCACCGCGGATTGGGCGCCATTCGTGGTTGGTGC
AGCAGCTGGTGGCAGCTTCAGTAGCAGCATCATCACCAGCAGCAGCAGCA
GCTTGAACCACCATCCGCACAACGGCCACCACAATCACCATCATCCGCCT
CATTACATCAATTATTTGGCGCAAATTGGCTGCCAGCATCGTGTCAGAAA
TTGGCCAACAAATGGCAATCAGGATCAGGCGGATGACGACGACGCTGGCC
ATCAGATCATCTCTAAATTCCTGCCCAAAAGTGCCTGGGACACGGTGCTG
TTGGATGTGAAGCGGGATGTAGATGAAGATGGAGATAGAGATAGAGATCG
GGTCGATGGCAATGTGCTGATGGTTCAGGGATCGTCATCATCATCATCGA
GAATGAAGGCGGAACGGGCACTCTATTATACTATGTCCGCTTATGGGTCC
AGCGGCGGCAGCGTCGACGCAGCGCAGGGCAGCGGAAGCGGGGGCGGAAG
ACAGCGCCACGCCCCACTCTACGGGCGATTCGTCGACGCAGAGGATCTGC
CTGCCACGCACCGGGATGTCATGCACCATCACTCTAGTCCCTCGTCTTCG
TCGGAGGTGCGCGCCATGCAGGCCCGGATTCCCAACCACTTTCGGGAGCC
CGCCTCGGGACCTTTGCGCAAGCTGAGTGTCGATCTGATAAAGACCTACA
AGCACATCAACGAGGTTTACTATGCGAAAAAGAAACGTCGTGCCCAGCAG
ACGCAAGGAGACGACGACTCATCTAACAAAAAGGAGCGAAAACTTTATAA
CGACGGCTACGACGACGATAATCACGACTATATAATCAAGAATGGCGAAA
GTTTTGGATCGCTACGAGATCGACTCTCTGATCGGCAAAAGCAGTTTTGG
CCAGGTGGTGAAAGCTTACGACCACGAAGGAGCAATGGCACGTGCGATCA
AAATAATTAACAATAAAAAAACCGTTCCTATACCAGCCCGGA
FMO12028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnb-RI | 2978 | CG42273-RI | 162..1190 | 9..1036 | 4910 | 98.7 | Plus |
| mnb-RH | 4228 | CG42273-RH | 162..1190 | 9..1036 | 4910 | 98.7 | Plus |
| mnb-RF | 4460 | CG42273-RF | 1916..2469 | 484..1036 | 2535 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17874405..17874879 | 483..9 | 2375 | 100 | Minus |
| X | 23542271 | X | 17870485..17870659 | 935..763 | 795 | 98.3 | Minus |
| X | 23542271 | X | 17873255..17873400 | 629..484 | 730 | 100 | Minus |
| X | 23542271 | X | 17872617..17872753 | 766..630 | 685 | 100 | Minus |
| X | 23542271 | X | 17870322..17870423 | 1036..934 | 250 | 89.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:13:58 has no hits.
FMO12028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:26 Download gff for
FMO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 155..1196 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:02 Download gff for
FMO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 155..1196 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:50 Download gff for
FMO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnb-RH | 155..1196 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:50 Download gff for
FMO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17870486..17870657 | 765..934 | 98 | <- | Minus |
| X | 17872619..17872753 | 630..764 | 100 | <- | Minus |
| X | 17873255..17873400 | 484..629 | 100 | <- | Minus |
| X | 17874405..17874886 | 1..483 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:02 Download gff for
FMO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17766652..17766786 | 630..764 | 100 | <- | Minus |
| arm_X | 17767288..17767433 | 484..629 | 100 | <- | Minus |
| arm_X | 17764519..17764690 | 765..934 | 98 | <- | Minus |
| arm_X | 17768438..17768919 | 1..483 | 99 | | Minus |
