FMO12029.5prime Sequence
1155 bp (1039 high quality bases) assembled on 2012-06-25
> FMO12029.5prime
CAGTCGACATGACCGTTAAGAACGGCGATGTCGTCAAGGACGATGTGAAT
TCGCGATCGCAGTACAAAACGAACATCGTCCTGGGCGCCAAACTAGAGGA
TTCGGATCGAGATCGAAAGAGCTTTGAGCCCAACAAGTCGAAAAAGAAGT
CCAAGCATGACGAGTCGGATGCCAGCGATGAGGAGGATGGCTCCCAGTAC
CATGAGGATGTCAAGCAGGTTAGCTACTTCCAGCTCTTTCGGTACGCCAC
CAAAAAGGATCGAGCGCTCTATGTGATCGGACTACTGTCTGCCGTGGCCA
CAGGCCTGACCACTCCGGCCAACAGTTTGATATTCGGTAATCTCGCCAAT
GACATGATTGACTTGGGTGGACTGCTTGAGAGCGGAAAATCATATCGAGC
TGACGATGCTATTTCTACTTTGCTTCTGGACAAAGTGCGGCAGTTCTCCC
TGCAAAACACCTACATCGGCATCATTATGCTGGTGTGTTCCTATCTCTCG
ATCACCTGCTTCAACTACGCGGCCCACTCCCAGATCCTCACCATCCGCTC
AAAGTTCTTTCGCTCCATTCTGCATCAGGACATGAAGTGGTACGACTTCA
ACCAGAGTGGCGAAGTAGCCAGCCGAATGAATGAAGATCTCTCCAAAATG
GAGGATGGCTTGGCCGAAAAAGTGGTCATGTTCGTCCATTACCTTGTCGC
CTTCGTGGGATCTTTGGTGCTAGCCTTTGTCAAGGGCTGGCAGCTATCCC
TGGTGTGCTTGACCAGTTTGCCACTAACATTCATCGCCATGGGCCTGGTG
GCCGTGGCCACGTCCCGCCTGGCGAAAAAGGAGGTGACCATGTATGCTGG
TGCTGCCGTGGTGGCTGAAGGCGCTCTCTCCGGAATTCGAACGGTAAAGG
CTTTTGAGGGCGAGGCGAAGGAGTGGCTGCGTACAGGAGCGTGTGTTTGC
TGCCAAGATCTTGAATATCAGAGAAATATTGTTCTCCGGGATCGGATTCG
GTCTGCTTTGGTTCTTCATTCTACGCATCCTATGCTCTGGCTTCTGGTTT
GGGAGTGGGGTCTGGTAATCAGGGATACCACGATCCCGCCGTATTGAAGA
ACTTACGATGCTGGCACCAATGATTCACCGAATTCTTTCCGTGATGATGG
TCATG
FMO12029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdr50-RA | 4256 | CG8523-RA | 105..1242 | 9..1150 | 5265 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14248756..14249211 | 635..1089 | 1795 | 96.3 | Plus |
2R | 25286936 | 2R | 14248295..14248578 | 351..634 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 14248000..14248226 | 125..351 | 1135 | 100 | Plus |
2R | 25286936 | 2R | 14247070..14247185 | 9..124 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:20:45 has no hits.
FMO12029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:42 Download gff for
FMO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdr50-RA | 101..1250 | 1..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:15 Download gff for
FMO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdr50-RA | 101..1250 | 1..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:12 Download gff for
FMO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdr50-RA | 101..1250 | 1..1155 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:12 Download gff for
FMO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14247066..14247185 | 1..124 | 96 | -> | Plus |
2R | 14248000..14248225 | 125..350 | 100 | -> | Plus |
2R | 14248295..14248578 | 351..634 | 100 | -> | Plus |
2R | 14248756..14249275 | 635..1155 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:15 Download gff for
FMO12029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10134571..10134690 | 1..124 | 96 | -> | Plus |
arm_2R | 10135505..10135730 | 125..350 | 100 | -> | Plus |
arm_2R | 10135800..10136083 | 351..634 | 100 | -> | Plus |
arm_2R | 10136261..10136780 | 635..1155 | 95 | | Plus |