Clone FMO12029 Report

Search the DGRC for FMO12029

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptMdr50-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12029.5prime Sequence

1155 bp (1039 high quality bases) assembled on 2012-06-25

> FMO12029.5prime
CAGTCGACATGACCGTTAAGAACGGCGATGTCGTCAAGGACGATGTGAAT
TCGCGATCGCAGTACAAAACGAACATCGTCCTGGGCGCCAAACTAGAGGA
TTCGGATCGAGATCGAAAGAGCTTTGAGCCCAACAAGTCGAAAAAGAAGT
CCAAGCATGACGAGTCGGATGCCAGCGATGAGGAGGATGGCTCCCAGTAC
CATGAGGATGTCAAGCAGGTTAGCTACTTCCAGCTCTTTCGGTACGCCAC
CAAAAAGGATCGAGCGCTCTATGTGATCGGACTACTGTCTGCCGTGGCCA
CAGGCCTGACCACTCCGGCCAACAGTTTGATATTCGGTAATCTCGCCAAT
GACATGATTGACTTGGGTGGACTGCTTGAGAGCGGAAAATCATATCGAGC
TGACGATGCTATTTCTACTTTGCTTCTGGACAAAGTGCGGCAGTTCTCCC
TGCAAAACACCTACATCGGCATCATTATGCTGGTGTGTTCCTATCTCTCG
ATCACCTGCTTCAACTACGCGGCCCACTCCCAGATCCTCACCATCCGCTC
AAAGTTCTTTCGCTCCATTCTGCATCAGGACATGAAGTGGTACGACTTCA
ACCAGAGTGGCGAAGTAGCCAGCCGAATGAATGAAGATCTCTCCAAAATG
GAGGATGGCTTGGCCGAAAAAGTGGTCATGTTCGTCCATTACCTTGTCGC
CTTCGTGGGATCTTTGGTGCTAGCCTTTGTCAAGGGCTGGCAGCTATCCC
TGGTGTGCTTGACCAGTTTGCCACTAACATTCATCGCCATGGGCCTGGTG
GCCGTGGCCACGTCCCGCCTGGCGAAAAAGGAGGTGACCATGTATGCTGG
TGCTGCCGTGGTGGCTGAAGGCGCTCTCTCCGGAATTCGAACGGTAAAGG
CTTTTGAGGGCGAGGCGAAGGAGTGGCTGCGTACAGGAGCGTGTGTTTGC
TGCCAAGATCTTGAATATCAGAGAAATATTGTTCTCCGGGATCGGATTCG
GTCTGCTTTGGTTCTTCATTCTACGCATCCTATGCTCTGGCTTCTGGTTT
GGGAGTGGGGTCTGGTAATCAGGGATACCACGATCCCGCCGTATTGAAGA
ACTTACGATGCTGGCACCAATGATTCACCGAATTCTTTCCGTGATGATGG
TCATG

FMO12029.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mdr50-RA 4256 CG8523-RA 105..1242 9..1150 5265 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14248756..14249211 635..1089 1795 96.3 Plus
2R 25286936 2R 14248295..14248578 351..634 1420 100 Plus
2R 25286936 2R 14248000..14248226 125..351 1135 100 Plus
2R 25286936 2R 14247070..14247185 9..124 580 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:20:45 has no hits.

FMO12029.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:42 Download gff for FMO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdr50-RA 101..1250 1..1155 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:15 Download gff for FMO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdr50-RA 101..1250 1..1155 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:12 Download gff for FMO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdr50-RA 101..1250 1..1155 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:12 Download gff for FMO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14247066..14247185 1..124 96 -> Plus
2R 14248000..14248225 125..350 100 -> Plus
2R 14248295..14248578 351..634 100 -> Plus
2R 14248756..14249275 635..1155 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:15 Download gff for FMO12029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10134571..10134690 1..124 96 -> Plus
arm_2R 10135505..10135730 125..350 100 -> Plus
arm_2R 10135800..10136083 351..634 100 -> Plus
arm_2R 10136261..10136780 635..1155 95   Plus