FMO12030.5prime Sequence
1126 bp (1017 high quality bases) assembled on 2012-06-25
> FMO12030.5prime
CAGTCGACATGTCGACCTATTTCGGGGTCTATATCCCGACCTCCAAAGCG
GGCTGTTTTGAGGGATCGGTGTCGCAGTGCATCGGCTCCATAGCCGCGGT
GAACATAAAGCCATCCAATCCGGCGTCTGGATCGGCATCAGTAGCATCGG
GATCGCCATCCGGCTCGGCGGCATCCGTGCAAACGGGCAACGCAGACGAT
GGCAGTGCTGCCACCAAGTACGAGGATCCCGACTATCCACCGGACTCGCC
ACTGTGGCTGATCTTCACGGAGAAATCCAAGGCGCTGGACATCCTGCGAC
ACTACAAGGAGGCGCGCCTCCGCGAGTTTCCCAATCTGGAGCAGGCGGAG
AGTTACGTTCAGTTTGGGTTCGAGAGCATCGAGGCGCTCAAGAGATTTTG
CAAGGCAAAGCCCGAAAGCAAGCCCATTCCGATAATCAGCGGTAGCGGTT
ACAAGAGCTCACCGACCTCGACGGACAATTCGTGCTCCTCCTCGCCGACG
GGTAACGGCAGTGGCTTCATCATTCCCCTGGGAAGCAATTCCTCAATGTC
GAATTTACTGCTCAGTGACTCACCGACTTCCTCGCCGAGCAGCTCCAGCA
ACGTCATTGCCAATGGGCGACAGCAGCAGATGCAGCAGCAACAGCAGCAG
CAGCCGCAGCAGCCGGATGTGTCCGGAGAAGGCCCTCCTTTCCGGGCGCC
CACCAAACAGGAACTGGTAGAGTTTCGCAAGCAAATCGAAGGTGGTCACA
TAGACCGGGTGAAGAGGATTATATGGGAGAATCCACGATTTTTGATCAGC
AGCGGTGATACGCCCACCAGTTTGAAGGAGGGCTGTCGCTATAATGCCAT
GCACATCTGCGCCCAGGTCAATAAGCCAGGATCGCTCAGTTGCTGTTAAA
GACCATTTCGGATCGGGAGTTCACTCAGCTTTACGTTGGCAGAATGGCAG
TGGCAAGATGTGCGGCTGCCCTCACATCAGTCTCCTGGACTTATTACCTG
AACATGCCTGGACAGGGGGGGCGGCGAAACACGCTCAACTTGCCGCAAGA
ACGTCATGGTGACCATGATCGAGGTTCTCCGTTCCTAATCCGGGAGTGCA
TTCGCTGCGATTCATGGAGGCCAAGG
FMO12030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0222-RG | 3855 | CG8465-RG | 149..1268 | 9..1126 | 5055 | 97.5 | Plus |
l(1)G0222-RE | 3876 | CG8465-RE | 155..1274 | 9..1126 | 5055 | 97.5 | Plus |
l(1)G0222-RD | 3870 | CG8465-RD | 149..1268 | 9..1126 | 5055 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17575157..17575768 | 1032..421 | 2715 | 98.4 | Minus |
X | 23542271 | X | 17578513..17578744 | 240..9 | 1160 | 100 | Minus |
X | 23542271 | X | 17575843..17576022 | 420..241 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:20:49 has no hits.
FMO12030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:42 Download gff for
FMO12030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RE | 148..1208 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:17 Download gff for
FMO12030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RD | 142..1202 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:14 Download gff for
FMO12030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0222-RD | 142..1202 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:14 Download gff for
FMO12030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17575127..17575768 | 421..1058 | 97 | <- | Minus |
X | 17575843..17576022 | 241..420 | 100 | <- | Minus |
X | 17578513..17578749 | 1..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:17 Download gff for
FMO12030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17472546..17472782 | 1..240 | 98 | | Minus |
arm_X | 17469160..17469801 | 421..1058 | 97 | <- | Minus |
arm_X | 17469876..17470055 | 241..420 | 100 | <- | Minus |