Clone FMO12030 Report

Search the DGRC for FMO12030

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:30
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(1)G0222-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12030.5prime Sequence

1126 bp (1017 high quality bases) assembled on 2012-06-25

> FMO12030.5prime
CAGTCGACATGTCGACCTATTTCGGGGTCTATATCCCGACCTCCAAAGCG
GGCTGTTTTGAGGGATCGGTGTCGCAGTGCATCGGCTCCATAGCCGCGGT
GAACATAAAGCCATCCAATCCGGCGTCTGGATCGGCATCAGTAGCATCGG
GATCGCCATCCGGCTCGGCGGCATCCGTGCAAACGGGCAACGCAGACGAT
GGCAGTGCTGCCACCAAGTACGAGGATCCCGACTATCCACCGGACTCGCC
ACTGTGGCTGATCTTCACGGAGAAATCCAAGGCGCTGGACATCCTGCGAC
ACTACAAGGAGGCGCGCCTCCGCGAGTTTCCCAATCTGGAGCAGGCGGAG
AGTTACGTTCAGTTTGGGTTCGAGAGCATCGAGGCGCTCAAGAGATTTTG
CAAGGCAAAGCCCGAAAGCAAGCCCATTCCGATAATCAGCGGTAGCGGTT
ACAAGAGCTCACCGACCTCGACGGACAATTCGTGCTCCTCCTCGCCGACG
GGTAACGGCAGTGGCTTCATCATTCCCCTGGGAAGCAATTCCTCAATGTC
GAATTTACTGCTCAGTGACTCACCGACTTCCTCGCCGAGCAGCTCCAGCA
ACGTCATTGCCAATGGGCGACAGCAGCAGATGCAGCAGCAACAGCAGCAG
CAGCCGCAGCAGCCGGATGTGTCCGGAGAAGGCCCTCCTTTCCGGGCGCC
CACCAAACAGGAACTGGTAGAGTTTCGCAAGCAAATCGAAGGTGGTCACA
TAGACCGGGTGAAGAGGATTATATGGGAGAATCCACGATTTTTGATCAGC
AGCGGTGATACGCCCACCAGTTTGAAGGAGGGCTGTCGCTATAATGCCAT
GCACATCTGCGCCCAGGTCAATAAGCCAGGATCGCTCAGTTGCTGTTAAA
GACCATTTCGGATCGGGAGTTCACTCAGCTTTACGTTGGCAGAATGGCAG
TGGCAAGATGTGCGGCTGCCCTCACATCAGTCTCCTGGACTTATTACCTG
AACATGCCTGGACAGGGGGGGCGGCGAAACACGCTCAACTTGCCGCAAGA
ACGTCATGGTGACCATGATCGAGGTTCTCCGTTCCTAATCCGGGAGTGCA
TTCGCTGCGATTCATGGAGGCCAAGG

FMO12030.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0222-RG 3855 CG8465-RG 149..1268 9..1126 5055 97.5 Plus
l(1)G0222-RE 3876 CG8465-RE 155..1274 9..1126 5055 97.5 Plus
l(1)G0222-RD 3870 CG8465-RD 149..1268 9..1126 5055 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17575157..17575768 1032..421 2715 98.4 Minus
X 23542271 X 17578513..17578744 240..9 1160 100 Minus
X 23542271 X 17575843..17576022 420..241 900 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:20:49 has no hits.

FMO12030.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:42 Download gff for FMO12030.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0222-RE 148..1208 1..1058 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:17 Download gff for FMO12030.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0222-RD 142..1202 1..1058 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:14 Download gff for FMO12030.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0222-RD 142..1202 1..1058 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:14 Download gff for FMO12030.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17575127..17575768 421..1058 97 <- Minus
X 17575843..17576022 241..420 100 <- Minus
X 17578513..17578749 1..240 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:17 Download gff for FMO12030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17472546..17472782 1..240 98   Minus
arm_X 17469160..17469801 421..1058 97 <- Minus
arm_X 17469876..17470055 241..420 100 <- Minus