FMO12031.5prime Sequence
1165 bp (1051 high quality bases) assembled on 2012-06-25
> FMO12031.5prime
CAGTCGACATGGCCACTGAGGCGGAGGGCGAGGAATTCGATGTGGATCCC
ATGGACGAGGACGATGAGGATCAGACCTACGACCGAGAGACCGAGGAGTT
CTATAGCAATATACAGGATGCCGCAGGCACCGGATCATCGAGTCGCAGCA
AGAGATCGTCGCTCTTCTCCAGATCGGATAGTTCCGCCACCACCACCTCG
TCGAGCGGCGGTGGAACCTTTACTGGCGGCAAGCGCAGATCGGCTGCCTC
TATTCTGTCCTCATCTATGTGCTCCGATCTAATGACCAGCGATCGCCGAA
GCTCCACGGCCACGGAATACAGCGTCAAGTCGGTGACCACCGGGAATACC
TCGCAACGCAGGTCGAGCGGACGGATTCGTAGATATGTCTCACGGATGAC
AATCGCCGGAGCCAGGAGACGCACCACGGGCAGTTTCGATGTAGAAAATG
GCCAGGGCGCTAGATCACCGCTCGAGGGCGGCTCACCCAGCGCCGGTTTG
GTACTACAGAATTTGCCGCAGCGTCGCGAATCGTTTCTATATCGCTCCGA
TTCGGACTTTGAGATGTCACCCAAGTCCATGTCCCGAAACTCAAGCATCG
CTAGCGAAAGCCATGGCGAGGATCTCATTGTGACGCCTTTCGCCCAAATT
TTAGCCAGCTTACGTTCAGTGCGCAACAATTTATTAAGTCTGACAAATGT
TCCAGCATCAAACAAATCCAGGCGGCCCAACCAATCGTCGTCGGCCTCGC
GATCAGGAAATCCACCAGGAGCCCCGCTATCCCAAGGCGAGGAGGCATAC
ACCCGCCTGGCCACCGACACAATCGAGGAGCTGGACTGGTGCCTCGACCA
GCTGGAGACCATCCAGACCCATCGCAGCGTCTCCGACATGCGTCGCTTAA
GTTCAAACGCATGCTCAACAAGGAGCTTGTCGCACTTTAGCGAGTCCAGC
AGATCAGGAAATCAGATTTCCGATATTTATGTTCCACATTTGGGACAGCA
ACAGGAGTTCGACTTGCCATCGCTGCGGGTGGAGGATAATCCGGAGCTGG
TCGCCCGCCAATGCAGCCGCCTGGTCAACAGTCGCTGAACGTATTGCAAC
GCCTCCCGGATCGGCCCGGCCGGTTCCGCCCATTGTCGCAAATATAGCGG
GTGTAAGACGCGTGT
FMO12031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RG | 2604 | CG32498-RG | 6..1132 | 9..1140 | 5155 | 97.8 | Plus |
| dnc-RN | 11128 | CG32498-RN | 4090..5216 | 9..1140 | 5155 | 97.8 | Plus |
| dnc-RC | 3792 | CG32498-RC | 1618..2320 | 433..1140 | 3035 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3314184..3314608 | 9..433 | 2125 | 100 | Plus |
| X | 23542271 | X | 3321038..3321217 | 431..610 | 900 | 100 | Plus |
| X | 23542271 | X | 3334145..3334331 | 716..901 | 885 | 99.5 | Plus |
| X | 23542271 | X | 3332440..3332546 | 609..715 | 535 | 100 | Plus |
| X | 23542271 | X | 3334553..3334644 | 900..991 | 335 | 95.7 | Plus |
| X | 23542271 | X | 3337245..3337329 | 997..1083 | 305 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:20:52 has no hits.
FMO12031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:43 Download gff for
FMO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RG | 3..1100 | 7..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:18 Download gff for
FMO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 4090..5184 | 9..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:17 Download gff for
FMO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 4090..5184 | 9..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:17 Download gff for
FMO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3334145..3334331 | 716..901 | 99 | -> | Plus |
| X | 3314184..3314608 | 9..433 | 100 | -> | Plus |
| X | 3321041..3321217 | 434..610 | 100 | -> | Plus |
| X | 3332442..3332546 | 611..715 | 100 | -> | Plus |
| X | 3334555..3334648 | 902..994 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:18 Download gff for
FMO12031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3208217..3208641 | 9..433 | 100 | -> | Plus |
| arm_X | 3215074..3215250 | 434..610 | 100 | -> | Plus |
| arm_X | 3226475..3226579 | 611..715 | 100 | -> | Plus |
| arm_X | 3228178..3228364 | 716..901 | 99 | -> | Plus |
| arm_X | 3228588..3228681 | 902..994 | 93 | -> | Plus |
