FMO12033.5prime Sequence
1130 bp (1045 high quality bases) assembled on 2012-06-25
> FMO12033.5prime
CAGTCGACATGGAATTCGACGACGCAGAAAATGGCCTAGGAATGGGATTT
GGTGGTCGCGGCGTTCTGCGGGAGATCAACAAAAACGATGGCGGCATTAA
GCTGAGTCCGTTGGCGGTGAAGCCCAGTCCCAAGCCAACGAGCATGGATC
AACAGAAGGCAATGGCGGCAGCTCTGGGGCATCAGACGGCGGTACCCGGT
GGACTTAAGCCAGAAGACGACCTCGTTCCAAAGTTTGGAGGTCTTCCCGA
GTTCGATGAGACGCAAATACCGGAACTAGCTCCTTTAAGTACCGATATGG
ATACTCAACTGAAATCCAACCATTCGGATTCGGATGTTTTTGTCGAGTGT
TTATCGCTTCATAGCGAGCGCTACACCGGAGATCGATCGGAGTTAGAGGC
ATATTCAAGTGCCCTTAATGATGTTTTGGAGCAGCAGCTGTCCATGACCT
CAGTTTCTACACTGGGAGCTGAATTCAACGATCCTTTGGCAGTTAGCCAG
CACAACAACGTCAGCTATGAAGCCATGGATGTGGATGACCTAAACGAAAC
CATGGAAATGTTAAAGGACGTCTTGAATGCGGAAGACCGTCATCTTATGC
AAACGCATATTCTCAGCGTAACCCAGTCAAAACCAGAGAATAATTTTGTG
CACTATCATCCAAATCAGGAGCAAAATAGGGTTGAACTAGACCAGTTAGC
CAAACACTCTAAACCCAATAGTGATGCAAAGGAATCAGAATCATTGGTAG
AATCAGTACTGTCTGAGGAGTCTGGTACACAATCCTTTGAGCCGAAGCTC
ACCTTATCTGCCTTGGACTCTACGAAGACTTAGCTAAGCATCAAGAGGAA
ATGCAAACAAATACAAAGATATATTTCAGAAGAGAAGCACCACCCGGTCA
GTAGTGCTCAGTGAAGGACGCACAAATCCTATGGAGCTGAAAAGGCCTTA
ATCTCAAAGAGCTCTCAGACTGTCCACAAATCAGCAAATCCTCTAGATAC
CTAATCAAGAGAGCAATTTCCGGGGCAGTAGATCATGAAAGACATGCATT
GCCATCAGCCTTGACAATGCATCCCCAGCTATGGAAGCCACTGAAGAACG
AACTGTGGAGACCTGATCAATGGATTGGAT
FMO12033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tacc-RJ | 4554 | CG9765-RJ | 173..1322 | 8..1130 | 4905 | 96.6 | Plus |
| tacc-RI | 4596 | CG9765-RI | 173..1322 | 8..1130 | 4905 | 96.6 | Plus |
| tacc-RA | 4593 | CG9765-RA | 173..1322 | 8..1130 | 4905 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4743518..4744182 | 961..304 | 2960 | 98.8 | Minus |
| 3R | 32079331 | 3R | 4744464..4744667 | 303..100 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 4748791..4748884 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:20:56 has no hits.
FMO12033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:44 Download gff for
FMO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RJ | 165..1297 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:20 Download gff for
FMO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RA | 166..1298 | 1..1110 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:18 Download gff for
FMO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RA | 166..1298 | 1..1110 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:18 Download gff for
FMO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4743353..4744182 | 304..1110 | 95 | <- | Minus |
| 3R | 4744464..4744665 | 102..303 | 100 | <- | Minus |
| 3R | 4748791..4748888 | 1..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:20 Download gff for
FMO12033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 574513..574610 | 1..101 | 96 | | Minus |
| arm_3R | 569075..569904 | 304..1110 | 95 | <- | Minus |
| arm_3R | 570186..570387 | 102..303 | 100 | <- | Minus |
