FMO12035.5prime Sequence
500 bp (500 high quality bases) assembled on 2012-06-25
> FMO12035.5prime
CAGTCGACATGCGTGCGGTTATACAAAGGGTTAAGGCTGCCAAAGTGACG
GTGTTGGATGAGCTGGTGTCCTCCATTGGACCAGGCCTGTGCGTGCTGGT
GGGAATCAAGGCCAGCGACACCGCCAAGGATGTTGAGTATCTTGTCCGGA
AAATCTTGGCTCTCCGTTTATTCGAGGAGGAGGGCAAGCGTTGGCAAAAG
TCCGTGAAGGATCTGAACCTAGAACTGCTGTGCGTCTCGCAGTTTACACT
GTATCACCGCCTTAAGGGCAACAAACCGGATTTTTTGGCTGCCATGAAGG
GCGAGGAGGCGCAGGAGTTGTACAATCAATTTTTGGATCGCCTAGGTCAA
TCCTACGATAGCACCAAGATTAAAGATGGCAAATTTGGAGCATACATGCA
AGTGCACATAGAAAACGATGGACCCGTAACCATTAATTTGGAGTCCCCCG
AACAAAAGGATACTGACAGAGAAGTGGACAAAGCAAGCTTTCTAGACCAT
FMO12035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18643-RB | 524 | CG18643-RB | 22..495 | 9..482 | 2370 | 100 | Plus |
| CG18643-RC | 528 | CG18643-RC | 22..499 | 9..482 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11430339..11430571 | 143..375 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 11430625..11430733 | 374..482 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 11430179..11430270 | 51..142 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 11430082..11430124 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:44 has no hits.
FMO12035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:22 Download gff for
FMO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18643-RB | 19..495 | 6..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:54 Download gff for
FMO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18643-RB | 19..495 | 6..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:42 Download gff for
FMO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18643-RB | 19..495 | 6..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:42 Download gff for
FMO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11430079..11430124 | 6..51 | 97 | -> | Plus |
| 3R | 11430180..11430270 | 52..142 | 100 | -> | Plus |
| 3R | 11430339..11430571 | 143..375 | 100 | -> | Plus |
| 3R | 11430627..11430733 | 376..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:54 Download gff for
FMO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7255801..7255846 | 6..51 | 97 | -> | Plus |
| arm_3R | 7255902..7255992 | 52..142 | 100 | -> | Plus |
| arm_3R | 7256061..7256293 | 143..375 | 100 | -> | Plus |
| arm_3R | 7256349..7256455 | 376..482 | 100 | | Plus |
