Clone FMO12036 Report

Search the DGRC for FMO12036

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:120
Well:36
Vector:pMK33-CFH-BD
Associated Gene/Transcriptl(3)neo43-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12036.5prime Sequence

341 bp (341 high quality bases) assembled on 2012-06-25

> FMO12036.5prime
CAGTCGACATGTCTCTCGTGGATAAATTAAACTATTACAGCACACGAAAA
TCGTTCAAATATGGCATACCCTTCCTCATCATGATGGTGGCTGGCTCCTT
TGGACTGCAGCAGTTCTCCAACCTCAGGTATCAGTACGCCAAGAAGCAGC
CGGTAACGCCGGAGGAGATGAAAAAGTACGGCGTAAGCATGAAAAACCGC
AAGGATGTGACGTTGGAGTCGGAGTACGACAAAGTCAAGTCCGTGGACAT
AGAGAACTGGGAGAACAAACGCGGTCCACGTCCCTGGGAGGAGCAGGAAG
ATCAGCCGACGACAGCGAAGCACGCAAGCTTTCTAGACCAT

FMO12036.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo43-RC 627 CG14865-RC 48..362 9..323 1575 100 Plus
l(3)neo43-RB 460 CG14865-RB 48..362 9..323 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15278246..15278444 323..125 995 100 Minus
3R 32079331 3R 15278502..15278621 128..9 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:13:48 has no hits.

FMO12036.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:23 Download gff for FMO12036.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 1..330 4..331 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:43:55 Download gff for FMO12036.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 1..330 4..331 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:44 Download gff for FMO12036.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 43..369 1..331 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:44 Download gff for FMO12036.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15278239..15278443 126..331 98 -> Minus
3R 15278502..15278626 1..125 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:43:55 Download gff for FMO12036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11103961..11104165 126..331 98 -> Minus
arm_3R 11104224..11104348 1..125 94   Minus