FMO12037.5prime Sequence
1149 bp (1047 high quality bases) assembled on 2012-06-25
> FMO12037.5prime
CAGTCGACATGTCGAAGCCGGGAACCCCCAAGCACGGCGCCGGCTCATCC
TCAGCAGCTGCTGCCCCCGAGAAGATTAGCAAATACAATATCAGCACAGA
GAAATGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGG
AGAAACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCAACCACAAC
TCATTCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCG
CTCCTGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGG
CCCTGGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGAC
CTGGTCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGG
CGAGGGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCA
GCCGGGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGT
GTAGTGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGT
GGCCCAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTA
TGGAGCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAG
TACCAGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTA
TGTCAAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGG
TAGATGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTC
GAGAAGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATTCTGAAGAT
CGAGCGGGCTGGCGATGTCCTCGCCGATGCTCCCGGAAAGGTGGCCCAAT
CCATTCTGCTGTTCTGCAAGGGACAGGGGCTGCTCACGTCGGTGGTGATG
CAAGGCGTTGATCGCGGACGCGCTTCTCCACGGCTAGCTCGGATCGCTGG
AGGGGGCAACGGATCGCGGCGCCTGTTCGCGCGCATCCTCGATGGAAGAT
TATGAAAAGCCCAACATCCGCCGGCCTAGCATCATGAACAGTGAATTGCC
AAGAAGGAGGCAAGGCTTTCTAAGACATCCGTTGGGCCCCGGGCAGGTA
FMO12037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RG | 1872 | CG2082-RG | 197..1301 | 8..1109 | 5255 | 98.7 | Plus |
| CG2082-RA | 1863 | CG2082-RA | 197..1292 | 8..1109 | 5110 | 97.9 | Plus |
| CG2082-RK | 2290 | CG2082-RK | 388..1419 | 81..1109 | 4890 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 524..196 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 881..719 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5760151..5760371 | 1100..882 | 745 | 93.2 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 718..604 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 598..523 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5771630..5771702 | 80..8 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 195..130 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762755 | 132..81 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:21:02 has no hits.
FMO12037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:45 Download gff for
FMO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 177..1289 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:24 Download gff for
FMO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 192..1304 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:21 Download gff for
FMO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 192..1304 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:21 Download gff for
FMO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760137..5760371 | 882..1113 | 93 | <- | Minus |
| 3R | 5760630..5760792 | 719..881 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 606..718 | 100 | <- | Minus |
| 3R | 5761636..5761717 | 525..605 | 95 | <- | Minus |
| 3R | 5762172..5762500 | 196..524 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 132..195 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 81..131 | 100 | <- | Minus |
| 3R | 5771630..5771705 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:24 Download gff for
FMO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1585859..1586093 | 882..1113 | 93 | <- | Minus |
| arm_3R | 1586352..1586514 | 719..881 | 100 | <- | Minus |
| arm_3R | 1586571..1586683 | 606..718 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 525..605 | 95 | <- | Minus |
| arm_3R | 1587894..1588222 | 196..524 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 132..195 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 81..131 | 100 | <- | Minus |
| arm_3R | 1597352..1597427 | 1..80 | 95 | | Minus |
