FMO12038.5prime Sequence
671 bp (671 high quality bases) assembled on 2012-06-25
> FMO12038.5prime
CAGTCGACATGAACACCAACACCATCAACCCTCAGGACGACTGTAGTAAC
ATCTCCAACAAGGATGTAGAGATCGATCGGGACCAGGAGCTCCAGACATC
ATCCGAAATCCAGACACCGGAAACACCGCAGACAGGGCGGCGCAAAAGGA
TGGACACGCCCATTCGAGTACGTGACATGATCAACCTTTACAACTTTGCC
ACTCAAAAGAACCAGGAACTGGAGATGGCCAAGTCCCTTTACTTTGGCGC
CATGTCAGAGGAAAACCAGAGGACGGATCTTGAGGGCGGTAGTAGCCTTT
GCAACATGTCCATGTCGGACGACAAGGAAAAAGAAAATGAGAGTATCCTC
CGAGTGAACAAGGAGTCTGCAGTCTTCCAATCGGCCAATACTGAGCTTCC
GTCTGATCCGAATACAGTAGAAAGGTCCTATCAAAGCAAAACTACAATTC
GACACACTAATAAAGGCGTGCGTATAATCATCGACATATTTTTTGATAAA
AAAGATAGCGAGATAGACATAGTGGGCAGCCGCGTGGAGACGGACATCCC
CGAGAGCCGCATCCTGTCCGATTTCCAGCAGCATTCGCTGGACATGAAGA
ACCAGGAGCTAAAGCCGGGGATCCAGGATGGATCGAGTACCCCCAAGTCC
GCGGCAAGCTTTCTAGACCAT
FMO12038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10317-RD | 1481 | CG10317-RD | 202..847 | 8..653 | 3230 | 100 | Plus |
| CG10317-RC | 965 | CG10317-RC | 202..847 | 8..653 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16370003..16370332 | 337..8 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 16369489..16369680 | 653..462 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 16369816..16369944 | 466..338 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:13 has no hits.
FMO12038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:34 Download gff for
FMO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RD | 196..853 | 1..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:12 Download gff for
FMO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RC | 196..853 | 1..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:51:57 Download gff for
FMO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10317-RC | 196..853 | 1..660 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:51:57 Download gff for
FMO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16369483..16369676 | 466..660 | 98 | <- | Minus |
| 3R | 16369817..16369944 | 338..465 | 100 | <- | Minus |
| 3R | 16370003..16370335 | 1..337 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:12 Download gff for
FMO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12195205..12195398 | 466..660 | 98 | <- | Minus |
| arm_3R | 12195539..12195666 | 338..465 | 100 | <- | Minus |
| arm_3R | 12195725..12196057 | 1..337 | 98 | | Minus |
