FMO12040.5prime Sequence
956 bp (954 high quality bases) assembled on 2012-06-25
> FMO12040.5prime
CAGTCGACATGGCTTCATTCTTGGCACGAACTGGCGGCCCCCTGATCGAA
ACCGTTAGGCCAGCGGCCATAAAAAAGATTCTTGGCCTGGCTCCCATCGC
CGTCCAGCAGCTGAGGAACCTCAATGTCCAGGAACACGTTTCCTACAGTC
TGCTCAATGAGGCCAAGATCCCAACACCTCGTTTCGCTGTTGCCAAGAAC
GGCAAGGAGGCCAACGATATCGCCACCAAGCTGAAGACCGATAACCTGGT
GCTGAAGGCTCAGGTTTTGGCCGGAGGACGAGGCAAAGGAACCTTTAAGA
ATGGCCTGAAGGGAGGTGTGCGAGTGGTCTACGATCCCCAGACCGCTGAA
GAACTTTCAAGCAAAATGATCGATCAGCTTCTGGTCACCAAGCAAACCGG
AGCAGCCGGTCGCATCTGCAAAAAGGTGATGGTTGCCGAAAGGAAGTTCC
CCCGCCGTGAGTTCTACTTCGCCGTGATGATGGAGCGTGCCTTTAACGGT
CCCGTGCTGATCGCCTCCAAGGAGGGTGGTGTTGATATTGAGGAGGTGGC
TGCCAGCAGTCCAGATGACATTTTGTACGAACCCATCGATATAGGCACTG
GCTTGACCAGTGAACAGGCCGAAAAGATCGTCAAGAAGGTTGGTCTGGGC
GGCGATGGCGAGGACACACATGTCCAGATGCTGTTGAATCTGTATGACCT
GTTCGTCAAGAAGGATGCCCTCTTGGTTGAGATCAACCCCTATGCCGAGG
ATGCCATGTCCGGCTGCTTCTTCGCATTGGATGCTAAGCTGCGATTTGAT
GACAACGCCGAGTTTCGTCAGAAGGAGCTGTTTTGCGCTGCGCGATTGGA
CCCAGGAGGATCCCAAAGGAAGTCGAGGCCTGCCAAATACATCTGAACTA
CATTGCCCTGGATGGCACTATCGGCTGCATGGTGAACGGCGCCGGTTCTG
GGCCTT
FMO12040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skap-RD | 1780 | CG11963-RD | 76..1011 | 9..946 | 4580 | 99.5 | Plus |
| skap-RC | 1767 | CG11963-RC | 63..998 | 9..946 | 4580 | 99.5 | Plus |
| skap-RH | 1914 | CG11963-RH | 76..1008 | 9..946 | 4525 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8940922..8941190 | 498..766 | 1330 | 99.6 | Plus |
| 3R | 32079331 | 3R | 8940699..8940862 | 335..498 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 8940481..8940634 | 181..334 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 8941408..8941583 | 769..946 | 695 | 97.8 | Plus |
| 3R | 32079331 | 3R | 8939667..8939772 | 76..181 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 8938820..8938888 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4904..4953 | 191..142 | 114 | 74.5 | Minus |
FMO12040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 16:45:46 Download gff for
FMO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RC | 70..1022 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:26 Download gff for
FMO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RC | 54..1006 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:55:24 Download gff for
FMO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RC | 54..1006 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:55:24 Download gff for
FMO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8939669..8939772 | 78..181 | 100 | -> | Plus |
| 3R | 8940482..8940634 | 182..334 | 100 | -> | Plus |
| 3R | 8940699..8940861 | 335..497 | 100 | -> | Plus |
| 3R | 8940922..8941193 | 498..768 | 98 | -> | Plus |
| 3R | 8941408..8941591 | 769..956 | 96 | | Plus |
| 3R | 8938811..8938888 | 1..77 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:26 Download gff for
FMO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4765391..4765494 | 78..181 | 100 | -> | Plus |
| arm_3R | 4766204..4766356 | 182..334 | 100 | -> | Plus |
| arm_3R | 4764533..4764610 | 1..77 | 94 | -> | Plus |
| arm_3R | 4766421..4766583 | 335..497 | 100 | -> | Plus |
| arm_3R | 4766644..4766915 | 498..768 | 98 | -> | Plus |
| arm_3R | 4767130..4767313 | 769..956 | 96 | | Plus |
