FMO12041.5prime Sequence
1007 bp (968 high quality bases) assembled on 2012-06-25
> FMO12041.5prime
CAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACATGGCACCA
AACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGCAATAAATT
CTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGTCTTCTACT
TGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTGCCTTCGAC
TGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATTGTGGGAGC
GGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAACCTTCACGG
ATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCTATATTGAA
AAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATATCGACCGCC
GCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAAGCTGAAAT
ACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGCACTGCAGC
CTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCCTGGGTGGG
AAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTTTCTAGTCT
CATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGACGCATTTA
GTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATCAAGGCGGC
GCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGATATGGTCGG
TGATCGGCCTGTCCGGCTTCCATACCTATCTGACGACTAGCGATCAGACA
ACCAACGAGGATCTTCAAGGGTTCCTTCTCCTCCAAAGGCGGTCCACGCA
CCCAAAATCCCTATTCACGGGGCAACATTTGCCTGACCTGCCTGTCACAT
CCTGTGCGGACCCATGACCCCCCTCGCTGATCGAAAGACGCGGCATCCGC
CCACCGACGAGTTCTTCCAGCAAATGCGCCACCAGGTCGAGTCCCGCGGA
ACGCACT
FMO12041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RR | 4156 | CG42318-RR | 1211..2202 | 9..1007 | 4640 | 98.1 | Plus |
| app-RO | 4422 | CG42318-RO | 1592..2583 | 9..1007 | 4640 | 98.1 | Plus |
| app-RM | 4537 | CG42318-RM | 1592..2583 | 9..1007 | 4640 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12215615..12215805 | 548..358 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12219978..12220168 | 199..9 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12216419..12216579 | 360..200 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12213719..12213873 | 812..658 | 760 | 99.4 | Minus |
| 3L | 28110227 | 3L | 12213940..12214052 | 657..545 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 12213357..12213474 | 934..815 | 425 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:20 has no hits.
FMO12041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:36 Download gff for
FMO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RI | 1538..2531 | 5..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:16 Download gff for
FMO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RM | 1590..2583 | 5..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:01 Download gff for
FMO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RM | 1590..2583 | 5..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:01 Download gff for
FMO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12213354..12213475 | 813..937 | 92 | <- | Minus |
| 3L | 12213719..12213873 | 658..812 | 99 | <- | Minus |
| 3L | 12213940..12214051 | 546..657 | 100 | <- | Minus |
| 3L | 12215618..12215802 | 361..545 | 100 | <- | Minus |
| 3L | 12216419..12216579 | 200..360 | 100 | <- | Minus |
| 3L | 12219978..12220170 | 5..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:16 Download gff for
FMO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12206454..12206575 | 813..937 | 92 | <- | Minus |
| arm_3L | 12206819..12206973 | 658..812 | 99 | <- | Minus |
| arm_3L | 12207040..12207151 | 546..657 | 100 | <- | Minus |
| arm_3L | 12208718..12208902 | 361..545 | 100 | <- | Minus |
| arm_3L | 12209519..12209679 | 200..360 | 100 | <- | Minus |
| arm_3L | 12213078..12213270 | 5..199 | 98 | | Minus |
