FMO12044.5prime Sequence
1136 bp (1010 high quality bases) assembled on 2012-06-25
> FMO12044.5prime
CAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTTTGTGGCAG
GTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAGCAGACGGT
GCAGTCGGTGCAGTCCATGCAGTCCGTGCAACATAGCCAGCTGCTTCAAT
CCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGAGCAACTAT
AACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGTCCAATGGG
TGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTCTATCAACA
CCTACAATGCTGGCTTATATCAAACCAATGGTAAGTCGCTGTTTTCTATA
CCCGAAAATGTTGTTATGCTTGAGAGCCAACCACCGCTATTGGGACCCGG
AGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACCACCACACCGG
AGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCCTGATGAAGGAGCCC
GCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCACACCGCAAGG
ACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGGACCACGACACTT
CCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGGCA
CGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCATGGTGCAAATGGG
AGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGAACAACATTCCCG
TGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAACAGAACTTCCTA
TCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTCGCCCAGCTTCAA
GGAGTACACCGGCTCCAAGAACAATCGTTTCTATCGCCGGCCAAGCGAGC
AAGAATCGCATTCACCACCGAGCAAGATTTTGCAACTTTTCAACACACGC
CCGGCTTGACCGAGGACCAACTGATTGGAATCTTTAACATCAAGATGTGC
CCGCCACATCGGTGCGCTGTTCCCCATGAGAACCGAACGCTCGTCGTCGG
AACTGATCGGATTTTCAAATACTCGCAAGCAATGCTGCTATCATGAAATT
GCACTATCTGGCTAATGAGTAAGACCTAAGTCCCAT
FMO12044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RI | 1831 | CG9218-RI | 301..1420 | 8..1119 | 5100 | 97.6 | Plus |
| sm-RAA | 15139 | CG9218-RA | 1498..2295 | 330..1119 | 3505 | 96.7 | Plus |
| sm-RZ | 2378 | CG9218-RZ | 1170..1967 | 330..1119 | 3505 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546444..19546771 | 335..8 | 1625 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 926..653 | 1220 | 98.6 | Minus |
| 2R | 25286936 | 2R | 19538029..19538211 | 561..379 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 653..557 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 19532177..19532376 | 1119..925 | 480 | 88.5 | Minus |
| 2R | 25286936 | 2R | 19546012..19546060 | 378..330 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:24 has no hits.
FMO12044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 11:41:39 Download gff for
FMO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 278..1386 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:44:18 Download gff for
FMO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 295..1403 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:52:03 Download gff for
FMO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 295..1403 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:52:03 Download gff for
FMO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19532436..19532711 | 654..926 | 98 | <- | Minus |
| 2R | 19537776..19537868 | 561..653 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 379..560 | 100 | <- | Minus |
| 2R | 19546012..19546059 | 331..378 | 100 | <- | Minus |
| 2R | 19546449..19546774 | 1..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:44:18 Download gff for
FMO12044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15425281..15425373 | 561..653 | 100 | <- | Minus |
| arm_2R | 15425535..15425716 | 379..560 | 100 | <- | Minus |
| arm_2R | 15433517..15433564 | 331..378 | 100 | <- | Minus |
| arm_2R | 15419941..15420216 | 654..926 | 98 | <- | Minus |
| arm_2R | 15433954..15434279 | 1..330 | 98 | | Minus |
